Rh1AG211900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0021195
Physical Location & Seq
Forward (+)
40524273 .. 40524596
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG211900.1

Sequence Viewer

Length: 324 bp
ATGAATCCAATTTCTGGCTTACCAGATTGCATCAGAGGCCTTGGAGGGATTGATCTCCTTAAGTTGCAAAAGTGTACAAGTCTCAAATCTCTTGTCAGACTACCAAAAGTAAAAGTACTGGATATGTGGCATTGTGACTCGTTGGAAAGAATAACATTTCAGTCATTATCATGTCTACCAAAGAAAATAGACATGTATCTGAGTAGGCGCTTCAAACTAGCTGAGATTGAGCACTGGTTCAAGTTGGAACCTATTGTAAAGGTTGATGTAAAAATTATTAACCTTTTAGGTTTTGTGCAACTTGAAACCTCTGGAAGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

107

Amino Acids

12.23

Weight (kDa)

9.18

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021195)

Species Orthologous Gene IDs
malus_domestica MD00G1048700.v1.1
rosa_roxburghii Rroxscaffold_4G00306750
rosa_samantha Rh1AG211900 Rh1CG196200 Rh1CG198900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 175
AfaI GTAC 2 cut(s) 76, 117
AfiI CCNNNNNNNGG 1 cut(s) 14
AflII CTTAAG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 214, 241, 305
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 86
AoxI GGCC 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 123, 239
BseDI CCNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 191, 213
BseNI ACTGG 2 cut(s) 123, 239
BshFI GGCC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 52
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 192, 214
BspLI GGNNCC 1 cut(s) 249
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 2 cut(s) 123, 239
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 200, 222
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 75, 116
CviAII CATG 2 cut(s) 171, 193
CviJI RGCY 4 cut(s) 18, 39, 221, 318
CviKI_1 RGCY 4 cut(s) 18, 39, 221, 318
CviQI GTAC 2 cut(s) 75, 116
DdeI CTNAG 2 cut(s) 200, 222
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 174, 196
FaiI YATR 3 cut(s) 125, 172, 194
FatI CATG 2 cut(s) 170, 192
FblI GTMKAC 1 cut(s) 175
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 1 cut(s) 39
HhaI GCGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 174, 196
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 2 cut(s) 4, 137
Hpy166II GTNNAC 2 cut(s) 75, 176
Hpy188I TCNGA 3 cut(s) 35, 98, 201
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 2 cut(s) 75, 176
HpyCH4V TGCA 3 cut(s) 30, 67, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 200, 222
Hsp92II CATG 2 cut(s) 174, 196
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 36, 104, 220, 297
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 9, 273
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 123, 225
MnlI CCTC 3 cut(s) 29, 38, 319
MseI TTAA 3 cut(s) 60, 279, 322
MslI CAYNNNNRTG 1 cut(s) 169
MspCI CTTAAG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 174, 196
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 196
PceI AGGCCT 1 cut(s) 39
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 14
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 249
RsaI GTAC 2 cut(s) 76, 117
RsaNI GTAC 2 cut(s) 75, 116
RseI CAYNNNNRTG 1 cut(s) 169
SaqAI TTAA 3 cut(s) 60, 279, 322
Sau3AI GATC 1 cut(s) 52
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 234
SetI ASST 6 cut(s) 223, 253, 264, 285, 292, 311
SfaNI GCATC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 9, 273
SseBI AGGCCT 1 cut(s) 39
SspMI CTAG 1 cut(s) 218
StuI AGGCCT 1 cut(s) 39
StyI CCWWGG 1 cut(s) 40
TasI AATT 2 cut(s) 9, 273
TatI WGTACW 2 cut(s) 74, 115
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 60, 279, 322
Tru9I TTAA 3 cut(s) 60, 279, 322
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 59
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.