Rh1CG196200

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0021195
Physical Location & Seq
Forward (+)
42934783 .. 42935106
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG196200.1

Sequence Viewer

Length: 324 bp
ATGAATCCAATTTCTGGCTTACCAGATTGCATCAGAGGCCTTGGAGGGATTGATCTCCTTAAGTTGCAAAAGTGTACAAGTCTCAAATCTCTTGTCAGACTACCAAAAGTAAAAGTACTGGATATGTGGCATTGTGACTCGTTGGAAAGAATAACATTTCAGTCATTATCATGTCTACCAAAGAAAATAGACATGTATCTGAGTAGGCGCTTCAAACTAGCTGAGATTGAGCACTGGTTCAAGTTGGAACCTATTGTAAAGGTTGATGTAAAAATTATTAACCTTTTAGGTTTTGTGCAACTTGAAACCTCTGGAAGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

107

Amino Acids

12.23

Weight (kDa)

9.18

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021195)

Species Orthologous Gene IDs
malus_domestica MD00G1048700.v1.1
rosa_roxburghii Rroxscaffold_4G00306750
rosa_samantha Rh1AG211900 Rh1CG196200 Rh1CG198900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 175
AfaI GTAC 2 cut(s) 76, 117
AfiI CCNNNNNNNGG 1 cut(s) 14
AflII CTTAAG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 214, 241, 305
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 86
AoxI GGCC 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 123, 239
BseDI CCNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 191, 213
BseNI ACTGG 2 cut(s) 123, 239
BshFI GGCC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 52
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 192, 214
BspLI GGNNCC 1 cut(s) 249
BspTI CTTAAG 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 2 cut(s) 123, 239
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 200, 222
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 75, 116
CviAII CATG 2 cut(s) 171, 193
CviJI RGCY 4 cut(s) 18, 39, 221, 318
CviKI_1 RGCY 4 cut(s) 18, 39, 221, 318
CviQI GTAC 2 cut(s) 75, 116
DdeI CTNAG 2 cut(s) 200, 222
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 174, 196
FaiI YATR 3 cut(s) 125, 172, 194
FatI CATG 2 cut(s) 170, 192
FblI GTMKAC 1 cut(s) 175
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 1 cut(s) 39
HhaI GCGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 174, 196
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 2 cut(s) 4, 137
Hpy166II GTNNAC 2 cut(s) 75, 176
Hpy188I TCNGA 3 cut(s) 35, 98, 201
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 2 cut(s) 75, 176
HpyCH4V TGCA 3 cut(s) 30, 67, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 200, 222
Hsp92II CATG 2 cut(s) 174, 196
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 36, 104, 220, 297
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 9, 273
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 123, 225
MnlI CCTC 3 cut(s) 29, 38, 319
MseI TTAA 3 cut(s) 60, 279, 322
MslI CAYNNNNRTG 1 cut(s) 169
MspCI CTTAAG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 174, 196
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 196
PceI AGGCCT 1 cut(s) 39
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 14
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 249
RsaI GTAC 2 cut(s) 76, 117
RsaNI GTAC 2 cut(s) 75, 116
RseI CAYNNNNRTG 1 cut(s) 169
SaqAI TTAA 3 cut(s) 60, 279, 322
Sau3AI GATC 1 cut(s) 52
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 1 cut(s) 234
SetI ASST 6 cut(s) 223, 253, 264, 285, 292, 311
SfaNI GCATC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 9, 273
SseBI AGGCCT 1 cut(s) 39
SspMI CTAG 1 cut(s) 218
StuI AGGCCT 1 cut(s) 39
StyI CCWWGG 1 cut(s) 40
TasI AATT 2 cut(s) 9, 273
TatI WGTACW 2 cut(s) 74, 115
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 60, 279, 322
Tru9I TTAA 3 cut(s) 60, 279, 322
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 59
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.