Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0024946

Physical Location & Seq

Genomic Coordinates Forward (+)

1641378 .. 1643972

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG013200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGTCCAAGGAAGAATGCGACTACTTGATAAAGCTTGCTACACCTCACATGGCAAAGTCGATTGTTGTCGATAGCAAGACTGGGAAGAGCAAAGATAGTAGAAAAACTAGTTGCGGAGCAAAGCTGCAGAGGAGTTTTGATGCTGTGTTTGCTTTAGAGGTAGAGTTGTTGATGCCAGGACCAGTGGGCATTGATGGCTTATTTAGAAATTTCGAGATTCTCAAGAAAACTGGGTTGAACAAATGTCTGAGGTCCGGATCGTGCAATGTGTTTCATTCTAAAGCCTGTAGACAAAAAATGCGGAGGGACAAGACTGAATGGCAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005788 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0019511 GO:0019538 GO:0031410 GO:0031543 GO:0031545 GO:0031974 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114 GO:0070013 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

9.64

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024946)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0387861
rosa_samantha	Rh1BG013200 Rh7AG335600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	292
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	2 cut(s)	117, 304
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	2 cut(s)	37, 127
AluI	AGCT	2 cut(s)	37, 127
AlwI	GGATC	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	182, 255
AvaII	GGWCC	2 cut(s)	182, 255
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	180
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	128, 289
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	182, 255
BmgT120I	GGNCC	2 cut(s)	182, 255
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	2 cut(s)	93, 243
BmsI	GCATC	2 cut(s)	133, 165
BmuI	ACTGGG	2 cut(s)	93, 243
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	257
Bse1I	ACTGG	3 cut(s)	88, 185, 238
Bse3DI	GCAATG	1 cut(s)	274
BseAI	TCCGGA	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	3 cut(s)	88, 185, 238
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	2 cut(s)	117, 304
BspCNI	CTCAG	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	88, 185, 238
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	251
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 198
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	2 cut(s)	128, 289
BstV1I	GCAGC	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	182, 255
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	4 cut(s)	37, 127, 201, 287
CviKI_1	RGCY	4 cut(s)	37, 127, 201, 287
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	182, 255
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	55
FaiI	YATR	1 cut(s)	53
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	217, 226, 258
Hpy8I	GTNNAC	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	130, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 198
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	55
Kpn2I	TCCGGA	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	260
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	69, 165, 192, 198, 219, 271, 301
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	133, 165
MaeI	CTAG	1 cut(s)	111
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	2 cut(s)	26, 100
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	5 cut(s)	57, 126, 154, 246, 300
MroI	TCCGGA	1 cut(s)	257
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	152, 198
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	182, 255
PstI	CTGCAG	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	2 cut(s)	182, 255
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	5 cut(s)	39, 49, 129, 165, 257
SfaNI	GCATC	2 cut(s)	133, 165
SfcI	CTRYAG	2 cut(s)	128, 289
SinI	GGWCC	2 cut(s)	182, 255
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	117, 304
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	3 cut(s)	62, 72, 216
TasI	AATT	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	17, 266
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	2 cut(s)	182, 255
XapI	RAATTY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.