Rh7AG335600

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0024946
Physical Location & Seq
Reverse (-)
38976614 .. 38994051
17438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG335600.1

Sequence Viewer

Length: 792 bp
ATGCTTCAAGCCCAGGACATTGATAGCGCATATGAAGAATGTGGAACTTTGCCAGAGGATATGGAACTTACTAGACAAATGAATGAGTCGGGGCTTCCGGTCTCATTTCAAACAAATAAGGAGAAGCAGAAAACAGTATCTCAAGGAAACAGAAAAGGAATGGGCCTGAAGATGATTGTGCTTCAATATCTATCCCCTTTAATATTTCTGTTTGTCATGAATAGATTAGTCAGAGGCTCGGCAAAAAACACCGCCTTTCATAGGTTTTGTGAGGGTTGGCATTTAAGCTCAGCTTTGTGTAATCAGATATGGGAAATCGTTGAATTCCAGTTGTCAATGGGCATTGATGGCTTATTTAGAAATTTCGAGATTCTCAAGAAAACTGGGTTGAACAAATGTCTGAGGTCCGGATCGTGCAATGTGTTTCATTCTAAAGCATGTAGACAAAAAATGCGGAAGGACAGACTGAATGGCAACAAATCATTGGTGGGATTACATCAAGGGAGTTGTGAAGTGTTGAACTTGACTTGGGAGGATTTTAAGATGCTGTTCTATGATCATTATTTCCATGAGACCATTAAAAATGTCAAGCTGCGAGGATTTGTTAAGCTAACTCAGGGTGATATGACAATCCCACAATATGAAGGCAAATTTAGGCAATTGTCTCGCTATGCACCGACTCTTATTGCTGATGAAGAGGCTAGCACTATAAAAATTCGTGGATGGACTTATTCGTCCCATTCGCAAAATGGTTGTGTTGTTAGGATTGAAAAGCTACAAAAAAAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

263

Amino Acids

30.32

Weight (kDa)

9.29

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 175 - 236 3.9e-08 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024946)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0387861
rosa_samantha Rh1BG013200 Rh7AG335600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 733
AccI GTMKAC 1 cut(s) 442
AccIII TCCGGA 1 cut(s) 407
AciI CCGC 2 cut(s) 252, 454
AclWI GGATC 1 cut(s) 418
AcsI RAATTY 4 cut(s) 323, 361, 650, 714
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 7 cut(s) 8, 110, 185, 323, 391, 520, 770
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 6 cut(s) 288, 293, 592, 610, 775, 787
AluI AGCT 6 cut(s) 288, 293, 592, 610, 775, 787
Alw26I GTCTC 3 cut(s) 106, 566, 669
AlwI GGATC 1 cut(s) 418
Aor13HI TCCGGA 1 cut(s) 407
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 4 cut(s) 323, 361, 650, 714
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 163, 405
AsuHPI GGTGA 1 cut(s) 632
AsuNHI GCTAGC 1 cut(s) 701
AvaII GGWCC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 579
BccI CCATC 2 cut(s) 341, 717
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 3 cut(s) 106, 566, 669
BfaI CTAG 2 cut(s) 72, 702
BfmI CTRYAG 1 cut(s) 788
BisI GCNGC 1 cut(s) 593
BlpI GCTNAGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 163, 405
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 534
BmtI GCTAGC 1 cut(s) 705
BmuI ACTGGG 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 289
BpuEI CTTGAG 2 cut(s) 126, 359
BsaI GGTCTC 2 cut(s) 106, 566
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 2 cut(s) 97, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 2 cut(s) 328, 388
Bse3DI GCAATG 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 407
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 728
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 3 cut(s) 303, 392, 629
BseNI ACTGG 2 cut(s) 328, 388
BseXI GCAGC 1 cut(s) 579
BshFI GGCC 1 cut(s) 165
BsiSI CCGG 2 cut(s) 98, 408
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 3 cut(s) 106, 566, 669
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 2 cut(s) 106, 566
Bsp13I TCCGGA 1 cut(s) 407
Bsp143I GATC 2 cut(s) 410, 556
Bsp1720I GCTNAGC 1 cut(s) 289
BspACI CCGC 2 cut(s) 252, 454
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 302, 393, 628
BspEI TCCGGA 1 cut(s) 407
BspHI TCATGA 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 705
BspPI GGATC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 106, 566
BsrDI GCAATG 1 cut(s) 424
BsrI ACTGG 2 cut(s) 328, 388
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 410, 556
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 690
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 3 cut(s) 289, 401, 615
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 728
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 413, 559
BstMAI GTCTC 3 cut(s) 106, 566, 669
BstMBI GATC 2 cut(s) 410, 556
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 788
BstV1I GCAGC 1 cut(s) 579
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 728
Cac8I GCNNGC 1 cut(s) 703
CciI TCATGA 1 cut(s) 216
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 163, 405
CviAII CATG 3 cut(s) 217, 438, 569
DdeI CTNAG 3 cut(s) 289, 401, 615
DpnI GATC 2 cut(s) 412, 558
DpnII GATC 2 cut(s) 410, 556
DrdI GACNNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco31I GGTCTC 2 cut(s) 106, 566
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 220, 441, 572
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 216, 437, 568
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 593
FokI GGATG 1 cut(s) 735
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 2 cut(s) 72, 702
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 593
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 98, 408
HhaI GCGC 1 cut(s) 29
Hin1II CATG 3 cut(s) 220, 441, 572
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 3 cut(s) 86, 370, 679
HpaII CCGG 2 cut(s) 98, 408
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 3 cut(s) 233, 306, 402
Hpy188III TCNNGA 4 cut(s) 217, 367, 376, 408
Hpy8I GTNNAC 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 451, 638
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 417, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 3 cut(s) 289, 401, 615
Hsp92II CATG 3 cut(s) 220, 441, 572
HspAI GCGC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 2 cut(s) 410, 556
LpnPI CCDG 8 cut(s) 26, 66, 111, 179, 341, 369, 421, 602
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 72, 702
MalI GATC 2 cut(s) 412, 558
MboI GATC 2 cut(s) 410, 556
MboII GAAGA 3 cut(s) 47, 181, 707
MfeI CAATTG 1 cut(s) 659
MluCI AATT 5 cut(s) 323, 361, 650, 659, 714
MlyI GAGTC 2 cut(s) 95, 673
MnlI CCTC 7 cut(s) 49, 227, 265, 396, 526, 590, 691
MroI TCCGGA 1 cut(s) 407
MseI TTAA 5 cut(s) 200, 284, 540, 579, 606
MspI CCGG 2 cut(s) 98, 408
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 659
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeI CATATG 1 cut(s) 31
NdeII GATC 2 cut(s) 410, 556
NheI GCTAGC 1 cut(s) 701
NlaIII CATG 3 cut(s) 220, 441, 572
NmeAIII GCCGAG 1 cut(s) 218
NspI RCATGY 1 cut(s) 441
PagI TCATGA 1 cut(s) 216
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 1 cut(s) 594
PleI GAGTC 2 cut(s) 94, 673
PpsI GAGTC 2 cut(s) 94, 673
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 2 cut(s) 163, 405
SaqAI TTAA 5 cut(s) 200, 284, 540, 579, 606
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 2 cut(s) 410, 556
Sau96I GGNCC 2 cut(s) 163, 405
SchI GAGTC 2 cut(s) 95, 673
ScrFI CCNGG 1 cut(s) 14
SetI ASST 8 cut(s) 266, 290, 295, 407, 594, 612, 777, 789
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 788
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 141, 374
SmoI CTYRAG 2 cut(s) 141, 374
Sse9I AATT 5 cut(s) 323, 361, 650, 659, 714
SsiI CCGC 2 cut(s) 252, 454
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 72, 702
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 366
TasI AATT 5 cut(s) 323, 361, 650, 659, 714
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 5 cut(s) 200, 284, 540, 579, 606
Tru9I TTAA 5 cut(s) 200, 284, 540, 579, 606
TseI GCWGC 1 cut(s) 592
TspDTI ATGAA 7 cut(s) 48, 95, 233, 248, 416, 657, 708
VpaK11BI GGWCC 1 cut(s) 405
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 4 cut(s) 323, 361, 650, 714
XceI RCATGY 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 2 cut(s) 72, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.