Rh1BG079400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0023418
Physical Location & Seq
Forward (+)
12387306 .. 12405251
17946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG079400.1

Sequence Viewer

Length: 480 bp
ATGTCAGTGGACGTGGAGGAGGGTTGCACCTTAGAGTGGATGAGTTTTGCACCTACCCGACTTTTTGTAAACATAACAGACGGTAATTTTACTAGAATTACCGAAGACCCATCTTTCACTTACATAGACATGCAAAACGCACTGGTGGATGGCTTTGAGCTTGGATTTCGGAATTTAATATATGATCCATGCGAGGGCTGGCATCATTCTGGCGAATGTTTTCCTCGCACAGTTGCAGGTGCGTTCCGTCATTCTCAAGCCAGCGCACCCGCCCAATTGGGTTGTTTAGGTACCAACCAAAGACCAGGCTACAATGAAATAACACCAACTACTCTGCCATCAATCACAGGTGATCCACCGCCCATCTCCTTCGCATCTGCAAGCTGGAGCTTCCATTTTTTTTTAGCAATAATTGCGACACCCAAGGGCCTTAATGCGGTCTCTGCTCAGTCGAACCTGACCCTGTTCATCCCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

159

Amino Acids

17.41

Weight (kDa)

4.65

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023418)

Species Orthologous Gene IDs
rosa_samantha Rh1BG079400 Rh1CG406000 Rh1DG102900 Rh2BG276300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AciI CCGC 3 cut(s) 270, 359, 437
AclWI GGATC 2 cut(s) 179, 347
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 3 cut(s) 36, 194, 436
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 160, 384, 390
AluI AGCT 3 cut(s) 160, 384, 390
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 179, 347
AoxI GGCC 1 cut(s) 427
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 219
Asp718I GGTACC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 362
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 111
BccI CCATC 4 cut(s) 118, 143, 346, 371
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 211, 383
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 194, 436
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 3 cut(s) 45, 154, 468
BseLI CCNNNNNNNGG 3 cut(s) 36, 194, 436
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 36, 194, 436
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 1 cut(s) 429
Bso31I GGTCTC 1 cut(s) 445
Bsp143I GATC 2 cut(s) 184, 352
BspACI CCGC 3 cut(s) 270, 359, 437
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 179, 347
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 184, 352
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 83, 232
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 200, 262, 382
BstDEI CTNAG 2 cut(s) 31, 447
BstF5I GGATG 3 cut(s) 45, 154, 468
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 187, 355
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 2 cut(s) 184, 352
BstMWI GCNNNNNNNGC 2 cut(s) 413, 443
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 429
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 3 cut(s) 45, 154, 468
BtsIMutI CAGTG 2 cut(s) 12, 140
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 200, 262, 382
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 291
CviAII CATG 2 cut(s) 130, 189
CviJI RGCY 8 cut(s) 153, 160, 198, 260, 309, 384, 390, 429
CviKI_1 RGCY 8 cut(s) 153, 160, 198, 260, 309, 384, 390, 429
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 31, 447
DpnI GATC 2 cut(s) 186, 354
DpnII GATC 2 cut(s) 184, 352
Eco130I CCWWGG 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 2 cut(s) 133, 192
FaiI YATR 6 cut(s) 74, 125, 131, 181, 183, 190
FatI CATG 2 cut(s) 129, 188
FauI CCCGC 1 cut(s) 277
FokI GGATG 3 cut(s) 52, 161, 455
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 1 cut(s) 429
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 133, 192
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 10, 70
Hpy188I TCNGA 1 cut(s) 171
Hpy8I GTNNAC 2 cut(s) 10, 70
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 2 cut(s) 83, 232
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 5 cut(s) 27, 50, 133, 236, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 443
HpyF3I CTNAG 2 cut(s) 31, 447
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 2 cut(s) 133, 192
HspAI GCGC 1 cut(s) 264
KpnI GGTACC 1 cut(s) 294
Kzo9I GATC 2 cut(s) 184, 352
LmnI GCTCC 1 cut(s) 387
LweI GCATC 2 cut(s) 211, 383
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 12
MalI GATC 2 cut(s) 186, 354
MboI GATC 2 cut(s) 184, 352
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 275
MluCI AATT 5 cut(s) 85, 96, 172, 275, 411
MnlI CCTC 4 cut(s) 10, 13, 187, 234
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 176, 432
MslI CAYNNNNRTG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 413, 443
NdeII GATC 2 cut(s) 184, 352
NlaIII CATG 2 cut(s) 133, 192
NlaIV GGNNCC 1 cut(s) 292
NspI RCATGY 1 cut(s) 133
PaqCI CACCTGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 427
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 176, 432
Sau3AI GATC 2 cut(s) 184, 352
Sau96I GGNCC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 306
SfaNI GCATC 2 cut(s) 211, 383
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 5 cut(s) 85, 96, 172, 275, 411
SsiI CCGC 3 cut(s) 270, 359, 437
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 83, 232
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 452
TasI AATT 5 cut(s) 85, 96, 172, 275, 411
Tru1I TTAA 2 cut(s) 176, 432
Tru9I TTAA 2 cut(s) 176, 432
TscAI CASTG 2 cut(s) 12, 147
TspDTI ATGAA 2 cut(s) 330, 457
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 12, 147
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.