Rh2BG276300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0023418
Physical Location & Seq
Forward (+)
30131199 .. 30131468
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG276300.1

Sequence Viewer

Length: 270 bp
ATGAACGACGGAGGTAATAACCAAGCGGACGAATCTCCGGTGAGAAAGACCAGAAGAGGACGCGGAGGAGGGGGACGGGAACAACACCACCCTTTTCTCCAAATCGACGATGCATTAAAACTCAACGATCTTCAGTCAGCTTTGACTTGTCAGCCTCAGACTCATGAACCCACCACCTCCACCTCCACACCCAGAAATCACAGAAATCCGAGGTGCCCATGTATTCAAACCTCGGTGCGCGCATCAAAAAGGCCAATTGAACCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.84

Weight (kDa)

9.49

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023418)

Species Orthologous Gene IDs
rosa_samantha Rh1BG079400 Rh1CG406000 Rh1DG102900 Rh2BG276300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AccII CGCG 2 cut(s) 63, 240
AciI CCGC 3 cut(s) 26, 63, 264
AcuI CTGAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 227, 260
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 251
AspLEI GCGC 2 cut(s) 240, 242
AsuHPI GGTGA 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 215
BmsI GCATC 2 cut(s) 100, 251
BsaJI CCNNGG 2 cut(s) 209, 231
BsaWI WCCGGW 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 209, 231
BseMII CTCAG 1 cut(s) 170
BsePI GCGCGC 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 63, 240
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 3 cut(s) 26, 63, 264
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 2 cut(s) 63, 240
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 209, 231
BssHII GCGCGC 1 cut(s) 238
BssMI GATC 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 156
BstFNI CGCG 2 cut(s) 63, 240
BstHHI GCGC 2 cut(s) 240, 242
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 2 cut(s) 63, 240
BsuRI GGCC 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 163
CfoI GCGC 2 cut(s) 240, 242
CseI GACGC 1 cut(s) 69
CviAII CATG 2 cut(s) 164, 219
CviJI RGCY 3 cut(s) 140, 154, 253
CviKI_1 RGCY 3 cut(s) 140, 154, 253
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 115
FaeI CATG 2 cut(s) 167, 222
FaiI YATR 2 cut(s) 165, 220
FaqI GGGAC 1 cut(s) 87
FatI CATG 2 cut(s) 163, 218
GlaI GCGC 2 cut(s) 239, 241
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 240, 242
Hin1II CATG 2 cut(s) 167, 222
Hin6I GCGC 2 cut(s) 238, 240
HinP1I GCGC 2 cut(s) 238, 240
HinfI GANTC 2 cut(s) 32, 160
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 159, 210
Hpy188III TCNNGA 1 cut(s) 164
Hpy99I CGWCG 2 cut(s) 11, 110
HpyCH4V TGCA 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 167, 222
HspAI GCGC 2 cut(s) 238, 240
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 3 cut(s) 51, 64, 205
LweI GCATC 2 cut(s) 100, 251
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 66, 122
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 9 cut(s) 5, 50, 59, 62, 165, 187, 193, 204, 241
Mph1103I ATGCAT 1 cut(s) 115
MseI TTAA 1 cut(s) 116
MspI CCGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 255
MvnI CGCG 2 cut(s) 63, 240
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 167, 222
NlaIV GGNNCC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 115
PagI TCATGA 1 cut(s) 163
PauI GCGCGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 32
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 215
PteI GCGCGC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 116
Sau3AI GATC 1 cut(s) 127
SchI GAGTC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 218
SetI ASST 6 cut(s) 16, 142, 179, 185, 215, 233
SfaNI GCATC 2 cut(s) 100, 251
Sse9I AATT 1 cut(s) 255
SsiI CCGC 3 cut(s) 26, 63, 264
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 255
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 17, 180
TspGWI ACGGA 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.