Rh1DG102900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0023418
Physical Location & Seq
Reverse (-)
19242098 .. 19246126
4029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG102900.1

Sequence Viewer

Length: 477 bp
ATGATGTCAGGGGACGTGGAGGAGGGTTGCACCGTAGAGTGGATGAGTTTTGCACCTACCCGACTTTTTGTAAACATAACAGACGGTAATTTGACTAGAATTACCGAAGACCTATCTTTCACATACGTACAAAATGCACTGGTGGATGGCTTTGAGCTTGGATTTCGGAATGATTATATATATGATCCATGCGAGGGCTGTAGAAACATGAACGACGGAGGTAATAACCAAGCAGACGAATCTCCGGTGAGAAAGACCAGAAGAGGACGCGGAGGAGGGGGACGGGAACAACACCACCCTTTTCTCCAAATCGACGATGCATTAAAACTCAACGATCTTCAGTCAGCTTTGACTTGTCAGCCTCAGACTCATGAACCCACCACCTCCACCTCCACACCCAGAAATCACAGAAATCCGAGGTGCCCATGTATTCAAACCTCGGTGCGCGCATCAAAAAGGCCAATTGAACCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.69

Weight (kDa)

5.54

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023418)

Species Orthologous Gene IDs
rosa_samantha Rh1BG079400 Rh1CG406000 Rh1DG102900 Rh2BG276300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 420
AccII CGCG 2 cut(s) 270, 447
AciI CCGC 2 cut(s) 270, 471
AclWI GGATC 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 39, 194
AgsI TTSAA 2 cut(s) 434, 467
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 2 cut(s) 157, 347
AluI AGCT 2 cut(s) 157, 347
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 447, 449
AsuHPI GGTGA 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 425
BanI GGYRCC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 114
BccI CCATC 1 cut(s) 140
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 422
BmsI GCATC 2 cut(s) 307, 458
BpiI GAAGAC 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 416, 438
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 194
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 416, 438
BseGI GGATG 2 cut(s) 48, 151
BseLI CCNNNNNNNGG 2 cut(s) 39, 194
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 144
BsePI GCGCGC 1 cut(s) 445
BseRI GAGGAG 2 cut(s) 35, 288
BseSI GKGCMC 1 cut(s) 425
Bsh1236I CGCG 2 cut(s) 270, 447
BshFI GGCC 1 cut(s) 460
BshNI GGYRCC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 2 cut(s) 26, 294
BslI CCNNNNNNNGG 2 cut(s) 39, 194
BsmFI GGGAC 2 cut(s) 26, 294
BsnI GGCC 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 184, 334
BspACI CCGC 2 cut(s) 270, 471
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 1 cut(s) 376
BspFNI CGCG 2 cut(s) 270, 447
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 416, 438
BssHII GCGCGC 1 cut(s) 445
BssMI GATC 2 cut(s) 184, 334
Bst4CI ACNGT 2 cut(s) 34, 86
Bst6I CTCTTC 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 48, 151
BstFNI CGCG 2 cut(s) 270, 447
BstHHI GCGC 2 cut(s) 447, 449
BstKTI GATC 2 cut(s) 187, 337
BstMBI GATC 2 cut(s) 184, 334
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 425
BstSNI TACGTA 1 cut(s) 127
BstUI CGCG 2 cut(s) 270, 447
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 1 cut(s) 460
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 48, 151
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 447
CciI TCATGA 1 cut(s) 370
CfoI GCGC 2 cut(s) 447, 449
CseI GACGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 128
CviAII CATG 4 cut(s) 189, 208, 371, 426
CviJI RGCY 6 cut(s) 150, 157, 198, 347, 361, 460
CviKI_1 RGCY 6 cut(s) 150, 157, 198, 347, 361, 460
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 186, 336
DpnII GATC 2 cut(s) 184, 334
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco105I TACGTA 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 4 cut(s) 192, 211, 374, 429
FaqI GGGAC 2 cut(s) 26, 294
FatI CATG 4 cut(s) 188, 207, 370, 425
FokI GGATG 2 cut(s) 55, 158
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 446, 448
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 276
HhaI GCGC 2 cut(s) 447, 449
Hin1II CATG 4 cut(s) 192, 211, 374, 429
Hin6I GCGC 2 cut(s) 445, 447
HinP1I GCGC 2 cut(s) 445, 447
HinfI GANTC 2 cut(s) 239, 367
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 168, 366, 417
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 218, 317
HpyCH4III ACNGT 2 cut(s) 34, 86
HpyCH4IV ACGT 2 cut(s) 15, 126
HpyCH4V TGCA 4 cut(s) 30, 53, 137, 320
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 15, 126
Hsp92II CATG 4 cut(s) 192, 211, 374, 429
HspAI GCGC 2 cut(s) 445, 447
Kzo9I GATC 2 cut(s) 184, 334
LpnPI CCDG 4 cut(s) 125, 258, 271, 412
LweI GCATC 2 cut(s) 307, 458
MaeI CTAG 1 cut(s) 96
MaeII ACGT 2 cut(s) 15, 126
MalI GATC 2 cut(s) 186, 336
MboI GATC 2 cut(s) 184, 334
MboII GAAGA 3 cut(s) 119, 273, 329
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 3 cut(s) 88, 99, 462
MlyI GAGTC 1 cut(s) 361
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 1 cut(s) 323
MspI CCGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 462
MvnI CGCG 2 cut(s) 270, 447
NdeII GATC 2 cut(s) 184, 334
NlaIII CATG 4 cut(s) 192, 211, 374, 429
NlaIV GGNNCC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 322
PagI TCATGA 1 cut(s) 370
PauI GCGCGC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 239
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 422
PteI GCGCGC 1 cut(s) 445
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 2 cut(s) 184, 334
SchI GAGTC 1 cut(s) 361
SduI GDGCHC 1 cut(s) 425
SfaNI GCATC 2 cut(s) 307, 458
SfcI CTRYAG 1 cut(s) 199
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 3 cut(s) 88, 99, 462
SsiI CCGC 2 cut(s) 270, 471
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 34, 86
TaiI ACGT 2 cut(s) 18, 129
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 88, 99, 462
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 224, 387
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 144
XspI CTAG 1 cut(s) 96
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.