Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0025476

Physical Location & Seq

Genomic Coordinates Forward (+)

26605417 .. 26605913

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG165900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCGGAGTCGGCCTTCCCATCAGCAGCCAGGTACAATCACGATGATCCGACGGCTGAGAACGACGGCGATCCTTCCTCCACCGTCCTCGATCTCACCAGCTTCCAACTCCACGACCTCGACTCGGTCGAGTTACCGCCGAGTCTGACCGAGTTAGACCTCACCGCCAACCGCCTCTCCTCCTTGGACACTCGCATTGGAACCCTCTCCAACCTCACCAAGCTCTCCTTCCACCAGAACCTCATCGACGCCGCCGCCGTCCAACTGATCTCCGCCTGGACCGCCCTCTCCGGCCTTGAGGAGTTGGTGTTGAGGGATAATAAGCTGAATAAAAGTCCCGATGTGAGCATCTTCAAGAAGCTTCTGGTTTTCGACGTCCCTCAGGTCGGCGACTTTGAATTGGGTATTGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

138

Amino Acids

15.0

Weight (kDa)

4.32

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025476)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000244.1_g000002
rosa_samantha	Rh1BG165900 Rh1DG196500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AciI	CCGC	7 cut(s)	137, 165, 172, 252, 255, 273, 282
AclWI	GGATC	2 cut(s)	41, 65
AcyI	GRCGYC	2 cut(s)	249, 375
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	124, 386
AgsI	TTSAA	2 cut(s)	355, 398
AjnI	CCWGG	2 cut(s)	29, 275
AjuI	GAANNNNNNNTTGG	3 cut(s)	212, 244, 390
AluBI	AGCT	4 cut(s)	102, 223, 325, 361
AluI	AGCT	4 cut(s)	102, 223, 325, 361
AlwI	GGATC	2 cut(s)	41, 65
AoxI	GGCC	2 cut(s)	12, 292
ApeKI	GCWGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	88, 154, 208
AvaII	GGWCC	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	3 cut(s)	69, 82, 242
BciT130I	CCWGG	2 cut(s)	31, 277
BisI	GCNGC	3 cut(s)	27, 252, 255
BlsI	GCNGC	3 cut(s)	28, 253, 256
Bme1390I	CCNGG	2 cut(s)	31, 277
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	31, 277
BmsI	GCATC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	249, 375
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 293, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 386
Bse21I	CCTNAGG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	31, 277
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	124, 386
BseMII	CTCAG	2 cut(s)	48, 395
BseRI	GAGGAG	2 cut(s)	169, 314
BseXI	GCAGC	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	14, 294
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	321, 362
BslI	CCNNNNNNNGG	2 cut(s)	124, 386
BsmFI	GGGAC	2 cut(s)	321, 362
BsnI	GGCC	2 cut(s)	14, 294
Bsp143I	GATC	4 cut(s)	46, 70, 91, 267
BspACI	CCGC	7 cut(s)	137, 165, 172, 252, 255, 273, 282
BspANI	GGCC	2 cut(s)	14, 294
BspCNI	CTCAG	2 cut(s)	49, 394
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	41, 65
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	46, 70, 91, 267
BssNI	GRCGYC	2 cut(s)	249, 375
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	31, 277
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	2 cut(s)	249, 375
BstDEI	CTNAG	2 cut(s)	57, 381
BstKTI	GATC	4 cut(s)	49, 73, 94, 270
BstMBI	GATC	4 cut(s)	46, 70, 91, 267
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	31, 277
BstSCI	CCNGG	2 cut(s)	29, 275
BstV1I	GCAGC	1 cut(s)	38
Bsu36I	CCTNAGG	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	14, 294
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	8 cut(s)	14, 29, 56, 102, 223, 294, 325, 361
CviKI_1	RGCY	8 cut(s)	14, 29, 56, 102, 223, 294, 325, 361
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	57, 381
DpnI	GATC	4 cut(s)	48, 72, 93, 269
DpnII	GATC	4 cut(s)	46, 70, 91, 267
EciI	GGCGGA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	29, 275
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	321, 362
Fnu4HI	GCNGC	3 cut(s)	27, 252, 255
Fsp4HI	GCNGC	3 cut(s)	27, 252, 255
GluI	GCNGC	3 cut(s)	27, 252, 255
HaeIII	GGCC	2 cut(s)	14, 294
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	2 cut(s)	249, 375
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	8, 122, 142
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	88, 154, 208
Hpy188I	TCNGA	3 cut(s)	7, 51, 147
Hpy188III	TCNNGA	3 cut(s)	41, 338, 355
Hpy99I	CGWCG	4 cut(s)	55, 68, 251, 377
HpyAV	CCTTC	3 cut(s)	25, 84, 238
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	57, 381
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	2 cut(s)	249, 375
Kzo9I	GATC	4 cut(s)	46, 70, 91, 267
LpnPI	CCDG	9 cut(s)	16, 43, 112, 248, 262, 289, 304, 350, 368
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	4 cut(s)	48, 72, 93, 269
MboI	GATC	4 cut(s)	46, 70, 91, 267
MboII	GAAGA	1 cut(s)	343
MluCI	AATT	2 cut(s)	398, 412
MlyI	GAGTC	3 cut(s)	17, 116, 151
MmeI	TCCRAC	4 cut(s)	74, 130, 234, 286
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	31, 277
MvaI	CCWGG	2 cut(s)	31, 277
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	4 cut(s)	46, 70, 91, 267
NlaIV	GGNNCC	1 cut(s)	202
NmeAIII	GCCGAG	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 255
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	28, 253, 256
PleI	GAGTC	3 cut(s)	16, 116, 150
PpsI	GAGTC	3 cut(s)	16, 116, 150
Psp6I	CCWGG	2 cut(s)	29, 275
PspGI	CCWGG	2 cut(s)	29, 275
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	279
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	3 cut(s)	27, 252, 255
Sau3AI	GATC	4 cut(s)	46, 70, 91, 267
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	3 cut(s)	17, 116, 151
ScrFI	CCNGG	2 cut(s)	31, 277
SfaNI	GCATC	1 cut(s)	357
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	398, 412
SsiI	CCGC	7 cut(s)	137, 165, 172, 252, 255, 273, 282
StyD4I	CCNGG	2 cut(s)	29, 275
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	5 cut(s)	90, 120, 129, 246, 372
TaqII	GACCGA	2 cut(s)	115, 164
TasI	AATT	2 cut(s)	398, 412
TauI	GCSGC	2 cut(s)	254, 257
TseI	GCWGC	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.