Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0025476

Physical Location & Seq

Genomic Coordinates Forward (+)

38769523 .. 38769876

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG196500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGGAGTCGGCCTTCCCATCAGCAGCCAGGTACAATCACGATGATCCGACGGCTGAGAACGACGGCGATCCTTCCTCCACCGTCCTCGATCTCACCAGCTTCCAACTCCACGACCTCGACTCGGTCGAGTTACCGCCGAGTCTGACCGAGTTAGACCTCACCGCCAACCGCCTCTCCTCCTTGGACACTCGCATTGGAACCCTCTCCAACCTCACCAAGCTCTCCTTCCACCAGAACCTCATCGACGCCGCCGCCGTCCAACTGATCTCCGCCTGGACCGCCCTCTCCGGCCTTGAGGTTTCCTCCTCAATCAAATCCAACACAAATTTTTTCCTTTTGGAATCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 LRR_8

Protein Analysis

117

Amino Acids

12.63

Weight (kDa)

4.21

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025476)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000244.1_g000002
rosa_samantha	Rh1BG165900 Rh1DG196500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	137, 165, 172, 252, 255, 273, 282
AclWI	GGATC	2 cut(s)	41, 65
AcsI	RAATTY	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	29, 275
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	102, 223
AluI	AGCT	2 cut(s)	102, 223
AlwI	GGATC	2 cut(s)	41, 65
AoxI	GGCC	2 cut(s)	12, 292
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	88, 154, 208
AvaII	GGWCC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	3 cut(s)	69, 82, 242
BciT130I	CCWGG	2 cut(s)	31, 277
BisI	GCNGC	3 cut(s)	27, 252, 255
BlsI	GCNGC	3 cut(s)	28, 253, 256
Bme1390I	CCNGG	2 cut(s)	31, 277
Bme18I	GGWCC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	31, 277
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	31, 277
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	2 cut(s)	169, 298
BseXI	GCAGC	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	14, 294
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	2 cut(s)	14, 294
Bsp143I	GATC	4 cut(s)	46, 70, 91, 267
BspACI	CCGC	7 cut(s)	137, 165, 172, 252, 255, 273, 282
BspANI	GGCC	2 cut(s)	14, 294
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	41, 65
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	46, 70, 91, 267
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	31, 277
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	57
BstKTI	GATC	4 cut(s)	49, 73, 94, 270
BstMBI	GATC	4 cut(s)	46, 70, 91, 267
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	31, 277
BstSCI	CCNGG	2 cut(s)	29, 275
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	14, 294
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	6 cut(s)	14, 29, 56, 102, 223, 294
CviKI_1	RGCY	6 cut(s)	14, 29, 56, 102, 223, 294
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	4 cut(s)	48, 72, 93, 269
DpnII	GATC	4 cut(s)	46, 70, 91, 267
EciI	GGCGGA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	29, 275
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
Fnu4HI	GCNGC	3 cut(s)	27, 252, 255
Fsp4HI	GCNGC	3 cut(s)	27, 252, 255
GluI	GCNGC	3 cut(s)	27, 252, 255
HaeIII	GGCC	2 cut(s)	14, 294
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	249
HinfI	GANTC	4 cut(s)	8, 122, 142, 344
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	88, 154, 208
Hpy188I	TCNGA	3 cut(s)	7, 51, 147
Hpy188III	TCNNGA	1 cut(s)	41
Hpy99I	CGWCG	3 cut(s)	55, 68, 251
HpyAV	CCTTC	3 cut(s)	25, 84, 238
HpyCH4III	ACNGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	46, 70, 91, 267
LpnPI	CCDG	7 cut(s)	16, 43, 112, 248, 262, 289, 304
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	4 cut(s)	48, 72, 93, 269
MboI	GATC	4 cut(s)	46, 70, 91, 267
MluCI	AATT	2 cut(s)	328, 349
MlyI	GAGTC	3 cut(s)	17, 116, 151
MmeI	TCCRAC	5 cut(s)	74, 130, 234, 286, 345
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	31, 277
MvaI	CCWGG	2 cut(s)	31, 277
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	4 cut(s)	46, 70, 91, 267
NlaIV	GGNNCC	1 cut(s)	202
NmeAIII	GCCGAG	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 255
PfeI	GAWTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	28, 253, 256
PleI	GAGTC	3 cut(s)	16, 116, 150
PpsI	GAGTC	3 cut(s)	16, 116, 150
Psp6I	CCWGG	2 cut(s)	29, 275
PspGI	CCWGG	2 cut(s)	29, 275
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	279
PsyI	GACNNNGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	3 cut(s)	27, 252, 255
Sau3AI	GATC	4 cut(s)	46, 70, 91, 267
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	3 cut(s)	17, 116, 151
ScrFI	CCNGG	2 cut(s)	31, 277
SetI	ASST	8 cut(s)	35, 104, 120, 162, 216, 225, 243, 303
SinI	GGWCC	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	2 cut(s)	328, 349
SsiI	CCGC	7 cut(s)	137, 165, 172, 252, 255, 273, 282
StyD4I	CCNGG	2 cut(s)	29, 275
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	4 cut(s)	90, 120, 129, 246
TaqII	GACCGA	2 cut(s)	115, 164
TasI	AATT	2 cut(s)	328, 349
TauI	GCSGC	2 cut(s)	254, 257
TfiI	GAWTC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.