Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0023519

Physical Location & Seq

Genomic Coordinates Reverse (-)

34507171 .. 34513819

Gene Structure 6649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG225000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCGTTCAAATCAATTTGATATCCGTAACGCCAAGTCGTTCAATTCCGACAAAATAATATTGAATTACGAAAAGTCCGATTTGGATTTGGGGACGGTTATAAACGGGTCGTCGTCTGGGTTCTCGGGTTTCGATTCCGATGGCGGCGGCTCCAAGGGACATCTGCAGCCGCGGCTGTCGGTGTCGTCGACGCAGGGAGTGGGAAATGATCAGGGGATTGGGTTGGGATCTGCGTCCGGATCGGTTTCCAATGGGACTTCGTCGGTGTCGTCCTCTGATGAGCAGCCAATTGTGCACGACCCCAGTCAATTTGGGGCTTTCAGCAATAAAGGGGAGGTTTTGAATTCTAAGAAGGATCTCAGCAAAGAAAAGTTGTCCAGAAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

129

Amino Acids

13.44

Weight (kDa)

6.06

Isoelectric Point (pI)

29.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023519)

Species	Orthologous Gene IDs
rosa_samantha	Rh1BG225000 Rh1DG252800 Rh3BG273200 Rh4CG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	4 cut(s)	144, 147, 170, 172
AclWI	GGATC	3 cut(s)	235, 247, 363
AcsI	RAATTY	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	9, 43, 64, 343
Alw21I	GWGCWC	1 cut(s)	297
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	235, 247, 363
Ama87I	CYCGRG	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	166, 283
ApoI	RAATTY	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	178, 295
BccI	CCATC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	6 cut(s)	145, 148, 167, 170, 173, 284
BlsI	GCNGC	6 cut(s)	146, 149, 168, 171, 174, 285
BmeT110I	CYCGRG	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	153, 170
BsaWI	WCCGGW	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	153, 170
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	178, 295
Bsh1236I	CGCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	3 cut(s)	106, 171, 268
BsmFI	GGGAC	3 cut(s)	106, 171, 268
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp13I	TCCGGA	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	208, 227, 239, 355
BspACI	CCGC	4 cut(s)	144, 147, 170, 172
BspCNI	CTCAG	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	3 cut(s)	235, 247, 363
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	153, 170
BssMI	GATC	4 cut(s)	208, 227, 239, 355
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	348, 359
BstDSI	CCRYGG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	4 cut(s)	211, 230, 242, 358
BstMBI	GATC	4 cut(s)	208, 227, 239, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 292
BstPAI	GACNNNNGTC	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	178, 295
BstX2I	RGATCY	2 cut(s)	227, 355
BstYI	RGATCY	2 cut(s)	227, 355
BtgI	CCRYGG	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	173
CseI	GACGC	2 cut(s)	199, 222
CviJI	RGCY	5 cut(s)	150, 169, 175, 286, 317
CviKI_1	RGCY	5 cut(s)	150, 169, 175, 286, 317
DdeI	CTNAG	2 cut(s)	348, 359
DpnI	GATC	4 cut(s)	210, 229, 241, 357
DpnII	GATC	4 cut(s)	208, 227, 239, 355
Eco130I	CCWWGG	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	1 cut(s)	101
FaqI	GGGAC	3 cut(s)	106, 171, 268
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	6 cut(s)	145, 148, 167, 170, 173, 284
Fsp4HI	GCNGC	6 cut(s)	145, 148, 167, 170, 173, 284
GluI	GCNGC	6 cut(s)	145, 148, 167, 170, 173, 284
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	2 cut(s)	199, 222
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	2 cut(s)	189, 295
Hpy188I	TCNGA	4 cut(s)	49, 79, 139, 277
Hpy188III	TCNNGA	2 cut(s)	237, 378
Hpy8I	GTNNAC	2 cut(s)	189, 295
Hpy99I	CGWCG	4 cut(s)	115, 190, 193, 265
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	166, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 292
HpyF3I	CTNAG	2 cut(s)	348, 359
Kpn2I	TCCGGA	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	208
KspI	CCGCGG	1 cut(s)	173
Kzo9I	GATC	4 cut(s)	208, 227, 239, 355
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	5 cut(s)	102, 179, 197, 250, 316
Lsp1109I	GCAGC	2 cut(s)	178, 295
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	210, 229, 241, 357
MboI	GATC	4 cut(s)	208, 227, 239, 355
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	2 cut(s)	227, 355
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	6 cut(s)	14, 43, 64, 288, 308, 343
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	283, 328
MroI	TCCGGA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	172, 292
NdeII	GATC	4 cut(s)	208, 227, 239, 355
NlaIV	GGNNCC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 185, 266
PfeI	GAWTC	1 cut(s)	134
PflFI	GACNNNGTC	1 cut(s)	259
PkrI	GCNGC	6 cut(s)	146, 149, 168, 171, 174, 285
PshAI	GACNNNNGTC	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	227, 355
PsyI	GACNNNGTC	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	187
SatI	GCNGC	6 cut(s)	145, 148, 167, 170, 173, 284
Sau3AI	GATC	4 cut(s)	208, 227, 239, 355
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	173
SgrBI	CCGCGG	1 cut(s)	173
SgrDI	CGTCGACG	1 cut(s)	187
Sse9I	AATT	6 cut(s)	14, 43, 64, 288, 308, 343
SsiI	CCGC	4 cut(s)	144, 147, 170, 172
SspI	AATATT	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	132, 188
TasI	AATT	6 cut(s)	14, 43, 64, 288, 308, 343
TauI	GCSGC	4 cut(s)	147, 150, 172, 175
TfiI	GAWTC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	166, 283
TspGWI	ACGGA	1 cut(s)	14
Tth111I	GACNNNGTC	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.