Rh4CG017000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0023519
Physical Location & Seq
Forward (+)
3332497 .. 3335473
2977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG017000.1

Sequence Viewer

Length: 303 bp
ATGCTGGTTGTTCGTATCAAAGAATTCATGAAAAAGGTGGTCACCAAAAAAGCCATTAAAAAGAAAGCCTTTCTTTCTTATTTGTGCTATTCTTCGCTGCTATGCTTCAAAGCAATAATTTCATCTGTTCTTTTGCTCTGTTTGTTGATTTCAGCAATAAAGGGGGAGGTTTTGAATTATAAGAAGGATCTCAGCAAAGAAAAGTTGTCCAGAAATGTGTTGTCCATATCAAAGAGGAGTTGCAGCTGTGGGATGAAGAGTCTTGATGTTTATATTTTGATGGGTGCATCTGTAAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.23

Weight (kDa)

9.87

Isoelectric Point (pI)

23.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023519)

Species Orthologous Gene IDs
rosa_samantha Rh1BG225000 Rh1DG252800 Rh3BG273200 Rh4CG017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 2 cut(s) 23, 295
AgsI TTSAA 2 cut(s) 109, 175
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
AlwI GGATC 1 cut(s) 195
ApeKI GCWGC 2 cut(s) 97, 243
ApoI RAATTY 2 cut(s) 23, 295
AsuHPI GGTGA 1 cut(s) 34
BbvI GCAGC 2 cut(s) 84, 255
BccI CCATC 1 cut(s) 274
BisI GCNGC 2 cut(s) 98, 244
BlsI GCNGC 2 cut(s) 99, 245
BmsI GCATC 1 cut(s) 296
BseGI GGATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 84, 255
Bsp143I GATC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 27
BspPI GGATC 1 cut(s) 195
BssMI GATC 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 191
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstPI GGTNACC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 84, 255
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BtsCI GGATG 1 cut(s) 258
CciI TCATGA 1 cut(s) 27
CviAII CATG 1 cut(s) 28
CviJI RGCY 3 cut(s) 53, 68, 246
CviKI_1 RGCY 3 cut(s) 53, 68, 246
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco91I GGTNACC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 23
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 103, 180, 227, 273
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 57, 89
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 98, 244
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 98, 244
GluI GCNGC 2 cut(s) 98, 244
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 3 cut(s) 28, 210, 263
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 243, 287
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 84, 255
LweI GCATC 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 2 cut(s) 84, 268
MflI RGATCY 1 cut(s) 187
MluCI AATT 4 cut(s) 23, 117, 175, 295
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 2 cut(s) 160, 228
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 246
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 27
PkrI GCNGC 2 cut(s) 99, 245
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PsiI TTATAA 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 98, 244
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 268
SetI ASST 3 cut(s) 39, 171, 248
SfaNI GCATC 1 cut(s) 296
SgeI CNNG 4 cut(s) 17, 40, 222, 275
Sse9I AATT 4 cut(s) 23, 117, 175, 295
TasI AATT 4 cut(s) 23, 117, 175, 295
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 97, 243
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 4 cut(s) 16, 44, 111, 269
XapI RAATTY 2 cut(s) 23, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.