Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0023519

Physical Location & Seq

Genomic Coordinates Reverse (-)

46671605 .. 46693225

Gene Structure 21621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG252800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGATTGGTCGGGTTTAGAAGGCCTCACAGACCTAGATCTTTCCAATAACAATCTATCTAGTCAAATTCCCTTCACTATGTGCTCACAACTACCAATGCTTGATTGGTTGAGATTAAGCAACAACAATTTTTCCGGGGAGCTTCCAGTGTTCTTGCAGTATTGTCAATGGCTGGGTGCACTGGATCTTTCAGGAAACAAATTCTCTGGGGCATTACCAGAGTCGATTGGAGAATGCCTACAATCATTGTCATATCTACTTCTAGGAGCCAACATGCTTGCTGGAAATATACCTCAACAATTATGCGGTCTCTCCAATCTTCAGGTACAATTCCCAGCAAAAGACCAAACTAAACGGAATCTCAAACAGAAAAACAAGCTTTACCCTTATAACCAACAGAGAAGAAGCTCCGAATTTGGCCACAACATCACTCCCAAAAGCGATCCTCGGCCTCCTCTCTCTCAAGACAGGAGCTTCGATGAGCCGACGCCGCGTGGCTCGCCGAGAGTCAGTAAGGATTTGGGGACGGTTATAAACGGGTCGTCGTCTGGGTTCTCGGGTTTCGATTCCGATGGCGGCGGCTCCAAGGGACATCTGCAGCCGCGGCTGTCGGTGTCGTCGACGCAGGGAGTGGGAAATGATCAGGGGATTGGGTTGGGATCTGCGTCCGGATCGGTTTCCAATGGGACTTCGTCGGTGTCGTCCTCTGATGAGCAGCCAATTGTGCACGACCCCAGTCAATTTGGGGCTTTCAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

253

Amino Acids

27.12

Weight (kDa)

5.59

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	4 - 44	4.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023519)

Species	Orthologous Gene IDs
rosa_samantha	Rh1BG225000 Rh1DG252800 Rh3BG273200 Rh4CG017000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	390, 533
AccI	GTMKAC	1 cut(s)	620
AccII	CGCG	2 cut(s)	493, 604
AccIII	TCCGGA	1 cut(s)	668
AciI	CCGC	6 cut(s)	306, 491, 576, 579, 602, 604
AclWI	GGATC	4 cut(s)	192, 437, 667, 679
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	3 cut(s)	66, 200, 413
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	488
AdeI	CACNNNGTG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	327
AluBI	AGCT	4 cut(s)	142, 379, 408, 474
AluI	AGCT	4 cut(s)	142, 379, 408, 474
Alw21I	GWGCWC	3 cut(s)	86, 181, 729
Alw26I	GTCTC	1 cut(s)	314
Alw44I	GTGCAC	2 cut(s)	177, 725
AlwI	GGATC	4 cut(s)	192, 437, 667, 679
Ama87I	CYCGRG	1 cut(s)	556
Aor13HI	TCCGGA	1 cut(s)	668
AoxI	GGCC	3 cut(s)	22, 418, 449
ApaLI	GTGCAC	2 cut(s)	177, 725
ApeKI	GCWGC	2 cut(s)	598, 715
ApoI	RAATTY	3 cut(s)	66, 200, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AsuC2I	CCSGG	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	556
BaeGI	GKGCMC	2 cut(s)	181, 729
BalI	TGGCCA	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	86, 181, 729
BbvI	GCAGC	2 cut(s)	610, 727
BccI	CCATC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	3 cut(s)	35, 60, 263
BfmI	CTRYAG	1 cut(s)	596
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	7 cut(s)	491, 577, 580, 599, 602, 605, 716
BlsI	GCNGC	7 cut(s)	492, 578, 581, 600, 603, 606, 717
Bme1390I	CCNGG	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	268, 583
BmrFI	CCNGG	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	729
BmuI	ACTGGG	1 cut(s)	729
BoxI	GACNNNNGTC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	135, 446, 585, 602
BsaWI	WCCGGW	1 cut(s)	668
Bse1I	ACTGG	3 cut(s)	146, 186, 735
BseAI	TCCGGA	1 cut(s)	668
BseDI	CCNNGG	4 cut(s)	135, 446, 585, 602
BseNI	ACTGG	3 cut(s)	146, 186, 735
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	2 cut(s)	181, 729
BseXI	GCAGC	2 cut(s)	610, 727
BseYI	CCCAGC	2 cut(s)	172, 334
Bsh1236I	CGCG	2 cut(s)	493, 604
BshFI	GGCC	3 cut(s)	24, 420, 451
BsiHKAI	GWGCWC	3 cut(s)	86, 181, 729
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	135, 669
BslFI	GGGAC	3 cut(s)	538, 603, 700
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	3 cut(s)	538, 603, 700
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	24, 420, 451
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	3 cut(s)	86, 181, 729
Bsp13I	TCCGGA	1 cut(s)	668
Bsp143I	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
BspACI	CCGC	6 cut(s)	306, 491, 576, 579, 602, 604
BspANI	GGCC	3 cut(s)	24, 420, 451
BspEI	TCCGGA	1 cut(s)	668
BspFNI	CGCG	2 cut(s)	493, 604
BspLI	GGNNCC	2 cut(s)	268, 583
BspMAI	CTGCAG	1 cut(s)	600
BspPI	GGATC	4 cut(s)	192, 437, 667, 679
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	146, 186, 735
BssECI	CCNNGG	4 cut(s)	135, 446, 585, 602
BssMI	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	529
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	279, 500
BstDSI	CCRYGG	1 cut(s)	602
BstFNI	CGCG	2 cut(s)	493, 604
BstKTI	GATC	6 cut(s)	40, 187, 445, 643, 662, 674
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
BstMWI	GCNNNNNNNGC	4 cut(s)	490, 499, 604, 724
BstNSI	RCATGY	1 cut(s)	277
BstPAI	GACNNNNGTC	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	596
BstSLI	GKGCMC	2 cut(s)	181, 729
BstUI	CGCG	2 cut(s)	493, 604
BstV1I	GCAGC	2 cut(s)	610, 727
BstX2I	RGATCY	3 cut(s)	37, 184, 659
BstYI	RGATCY	3 cut(s)	37, 184, 659
BsuRI	GGCC	3 cut(s)	24, 420, 451
BtgI	CCRYGG	1 cut(s)	602
BtsIMutI	CAGTG	2 cut(s)	153, 179
Cac8I	GCNNGC	2 cut(s)	279, 500
Cfr42I	CCGCGG	1 cut(s)	605
CseI	GACGC	3 cut(s)	496, 631, 654
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	1 cut(s)	326
DpnI	GATC	6 cut(s)	39, 186, 444, 642, 661, 673
DpnII	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
DraIII	CACNNNGTG	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	1 cut(s)	277
FaiI	YATR	7 cut(s)	80, 253, 275, 290, 304, 390, 533
FaqI	GGGAC	3 cut(s)	538, 603, 700
FatI	CATG	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	7 cut(s)	491, 577, 580, 599, 602, 605, 716
Fsp4HI	GCNGC	7 cut(s)	491, 577, 580, 599, 602, 605, 716
FspBI	CTAG	3 cut(s)	35, 60, 263
GluI	GCNGC	7 cut(s)	491, 577, 580, 599, 602, 605, 716
GsaI	CCCAGC	2 cut(s)	176, 338
HaeIII	GGCC	3 cut(s)	24, 420, 451
HapII	CCGG	2 cut(s)	135, 669
HgaI	GACGC	3 cut(s)	496, 631, 654
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	4 cut(s)	221, 358, 507, 566
HpaII	CCGG	2 cut(s)	135, 669
Hpy166II	GTNNAC	3 cut(s)	179, 621, 727
Hpy188I	TCNGA	3 cut(s)	412, 571, 709
Hpy188III	TCNNGA	3 cut(s)	192, 464, 669
Hpy8I	GTNNAC	3 cut(s)	179, 621, 727
Hpy99I	CGWCG	5 cut(s)	490, 547, 622, 625, 697
HpyAV	CCTTC	2 cut(s)	14, 82
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4V	TGCA	4 cut(s)	157, 179, 598, 727
HpyF10VI	GCNNNNNNNGC	4 cut(s)	490, 499, 604, 724
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	1 cut(s)	277
Kpn2I	TCCGGA	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	640
KspI	CCGCGG	1 cut(s)	605
Kzo9I	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
LmnI	GCTCC	5 cut(s)	139, 266, 413, 471, 587
Lsp1109I	GCAGC	2 cut(s)	610, 727
MaeI	CTAG	3 cut(s)	35, 60, 263
MalI	GATC	6 cut(s)	39, 186, 444, 642, 661, 673
MboI	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
MboII	GAAGA	2 cut(s)	311, 414
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	3 cut(s)	37, 184, 659
MhlI	GDGCHC	3 cut(s)	86, 181, 729
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	8 cut(s)	66, 127, 200, 299, 329, 413, 720, 740
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	230, 516
MnlI	CCTC	6 cut(s)	35, 303, 456, 462, 465, 715
Mox20I	TGGCCA	1 cut(s)	420
MroI	TCCGGA	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	2 cut(s)	135, 669
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	239
MvnI	CGCG	2 cut(s)	493, 604
MwoI	GCNNNNNNNGC	4 cut(s)	490, 499, 604, 724
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	2 cut(s)	268, 583
NmeAIII	GCCGAG	2 cut(s)	427, 528
NspI	RCATGY	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	2 cut(s)	617, 698
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	358, 566
PflFI	GACNNNGTC	1 cut(s)	691
PkrI	GCNGC	7 cut(s)	492, 578, 581, 600, 603, 606, 717
PleI	GAGTC	2 cut(s)	229, 515
PpsI	GAGTC	2 cut(s)	229, 515
PshAI	GACNNNNGTC	1 cut(s)	735
PsiI	TTATAA	2 cut(s)	390, 533
PspFI	CCCAGC	2 cut(s)	172, 334
PspN4I	GGNNCC	2 cut(s)	268, 583
PstI	CTGCAG	1 cut(s)	600
PsuI	RGATCY	3 cut(s)	37, 184, 659
PsyI	GACNNNGTC	1 cut(s)	691
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	605
SalI	GTCGAC	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	7 cut(s)	491, 577, 580, 599, 602, 605, 716
Sau3AI	GATC	6 cut(s)	37, 184, 442, 640, 659, 671
SchI	GAGTC	2 cut(s)	230, 516
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	3 cut(s)	86, 181, 729
SetI	ASST	7 cut(s)	36, 144, 295, 327, 381, 410, 476
SfcI	CTRYAG	1 cut(s)	596
Sfr303I	CCGCGG	1 cut(s)	605
SgrBI	CCGCGG	1 cut(s)	605
SgrDI	CGTCGACG	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
Sse9I	AATT	8 cut(s)	66, 127, 200, 299, 329, 413, 720, 740
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	6 cut(s)	306, 491, 576, 579, 602, 604
SspMI	CTAG	3 cut(s)	35, 60, 263
StuI	AGGCCT	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	529
TaqI	TCGA	4 cut(s)	224, 477, 564, 620
TasI	AATT	8 cut(s)	66, 127, 200, 299, 329, 413, 720, 740
TauI	GCSGC	5 cut(s)	493, 579, 582, 604, 607
TfiI	GAWTC	2 cut(s)	358, 566
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	153, 186
TseI	GCWGC	2 cut(s)	598, 715
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	153, 186
Tth111I	GACNNNGTC	1 cut(s)	691
VneI	GTGCAC	2 cut(s)	177, 725
XapI	RAATTY	3 cut(s)	66, 200, 413
XceI	RCATGY	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	620
XspI	CTAG	3 cut(s)	35, 60, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.