Rh1BG268300

lysM domain receptor-like kinase 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0023521
Physical Location & Seq
Reverse (-)
40222648 .. 40222890
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG268300.1

Sequence Viewer

Length: 243 bp
ATGCTCTGCCGCAGCCACCACACCTCCATCGTCAAGCTCTTCGGTGCCTCCGTCTCCGGAGACAACGTCTTCTTGGTCTACGAATTCGTAAGCAACTGCGCCAGCCTCGCCGCGTGTCTGAGAAACAAGAACAACCCCAATTTCACCGTGCTGTCGACGTGGGCATCAAGAATGCAGGTCGCCGCCGACCTCGCCCAGGGCCTCGATTATATTCACAATAACACAGGCCTCAATGTCCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

80

Amino Acids

8.71

Weight (kDa)

7.77

Isoelectric Point (pI)

21.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 74 2.3e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023521)

Species Orthologous Gene IDs
rosa_samantha Rh1BG268300 Rh1DG298400
rosa_wichuraiana Rw0G019340 Rw4G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 2 cut(s) 78, 155
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 3 cut(s) 10, 111, 183
AcsI RAATTY 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 196
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 54, 58
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 2 cut(s) 199, 226
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 136
BanI GGYRCC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 54, 58
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 4 cut(s) 10, 13, 111, 183
BlsI GCNGC 4 cut(s) 11, 14, 112, 184
Bme1390I CCNGG 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 195, 196
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 195, 196
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 201, 228
BshNI GGYRCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 54, 58
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 2 cut(s) 201, 228
Bsp13I TCCGGA 1 cut(s) 56
BspACI CCGC 3 cut(s) 10, 111, 183
BspANI GGCC 2 cut(s) 201, 228
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 56
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 166
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 195, 196
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 119
BstENI CCTNNNNNAGG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 54, 58
BstMWI GCNNNNNNNGC 2 cut(s) 107, 191
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 201, 228
BtrI CACGTC 1 cut(s) 159
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 199
CviJI RGCY 5 cut(s) 15, 37, 105, 201, 228
CviKI_1 RGCY 5 cut(s) 15, 37, 105, 201, 228
DdeI CTNAG 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 58
FaiI YATR 1 cut(s) 210
FaqI GGGAC 1 cut(s) 221
FblI GTMKAC 2 cut(s) 78, 155
Fnu4HI GCNGC 4 cut(s) 10, 13, 111, 183
Fsp4HI GCNGC 4 cut(s) 10, 13, 111, 183
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 10, 13, 111, 183
HaeIII GGCC 2 cut(s) 201, 228
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 79, 156
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 57, 168
Hpy8I GTNNAC 2 cut(s) 79, 156
Hpy99I CGWCG 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 2 cut(s) 66, 158
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 191
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 66, 158
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 56
LguI GCTCTTC 1 cut(s) 44
LpnPI CCDG 6 cut(s) 70, 115, 161, 182, 209, 210
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 173
MaeII ACGT 2 cut(s) 66, 158
MboII GAAGA 2 cut(s) 31, 61
MluCI AATT 2 cut(s) 83, 139
MnlI CCTC 6 cut(s) 34, 58, 116, 200, 212, 239
MroI TCCGGA 1 cut(s) 56
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 107, 191
NlaIV GGNNCC 1 cut(s) 46
PasI CCCWGGG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 4 cut(s) 11, 14, 112, 184
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 44
SatI GCNGC 4 cut(s) 10, 13, 111, 183
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 197
SetI ASST 6 cut(s) 26, 39, 69, 161, 180, 192
SfaNI GCATC 1 cut(s) 173
Sse9I AATT 2 cut(s) 83, 139
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 3 cut(s) 10, 111, 183
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 2 cut(s) 69, 161
TaqI TCGA 2 cut(s) 155, 204
TasI AATT 2 cut(s) 83, 139
TauI GCSGC 3 cut(s) 12, 113, 185
TseI GCWGC 1 cut(s) 12
TspGWI ACGGA 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 65
XagI CCTNNNNNAGG 1 cut(s) 194
XapI RAATTY 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 78, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.