Rw4G006810

lysM domain receptor-like kinase 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0023521
Physical Location & Seq
Forward (+)
14291927 .. 14292658
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006810.1

Sequence Viewer

Length: 732 bp
ATGAGCCTCTTCAACAATCTCCACCCAATAAAACCACCCAGCCATGTACTGTTGGTGCCACCAGCCACCCATATCTACAAGTCCAAAATGGCCGTCGACACCGCCTTGCCCACCTCCTCCCCTCGACCCACAACCCAATTGTCCGAATCCGCCCGGACCCGGACCCGTACCCAAACCCGACCCACCTTCACCTCCTCCTCCTCCAAGCCCTCCACCTCCAGCTCAAACACAAGCTACAAGCTCTCCTCCACCGCCTCCACCTCCAGCCAAACCTCCCTTGCCAGCTTCCACCTCTCCCTCCCCGAAAACCCTAACCTCTACGACCTCTTCGAAATCTGCGCCGCCACCAACAACTTCCTCGCCAAGCGCTTCAGCTCCTCCTCTTTCACCCCCTCCTGGCGCTGCACCCTCCGTGGCAGAGACGCTGTCGTCTTCCAGAGCAAGTTCCGCCACAGGCTCGAAACCCAAGAACTCAAGAACCGGCTCTCCATGCTCTGCCGCAGCCACCACACCTCCATCGTCAAGCTCTTCGGCGCCTCCATCTCCGGCGACAACGTCTTCTTGGTCTACGAATTTGTAAGCAACTGCGCCAGCCTCGCTGCGTGTCTGAGACACAAGAACAACCCCAATTTCACCGTGCTATCGACGTGGGCGTCAAGAATGCAGGTCGCCGCCGACCTCGCCCAGGGCCTCAATTATATTCACAATAACACAAGCCTCAATGTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

26.91

Weight (kDa)

10.08

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 152 - 238 2.8e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023521)

Species Orthologous Gene IDs
rosa_samantha Rh1BG268300 Rh1DG298400
rosa_wichuraiana Rw0G019340 Rw4G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 428, 652
Acc36I ACCTGC 1 cut(s) 655
AccB1I GGYRCC 2 cut(s) 55, 533
AccI GTMKAC 2 cut(s) 96, 567
AciI CCGC 7 cut(s) 102, 150, 252, 342, 448, 499, 672
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 534, 653
AfaI GTAC 2 cut(s) 48, 169
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 159, 396, 685
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 1 cut(s) 648
AjnI CCWGG 2 cut(s) 395, 684
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 6 cut(s) 222, 234, 241, 285, 375, 526
AluI AGCT 6 cut(s) 222, 234, 241, 285, 375, 526
Alw26I GTCTC 2 cut(s) 414, 604
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 2 cut(s) 90, 688
ApeKI GCWGC 3 cut(s) 402, 501, 599
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspLEI GCGC 5 cut(s) 341, 369, 402, 536, 590
AspS9I GGNCC 3 cut(s) 156, 162, 688
AsuC2I CCSGG 2 cut(s) 154, 160
AsuHPI GGTGA 3 cut(s) 181, 379, 625
AsuII TTCGAA 1 cut(s) 330
AvaII GGWCC 2 cut(s) 156, 162
BanI GGYRCC 2 cut(s) 55, 533
BbsI GAAGAC 2 cut(s) 424, 550
BbvI GCAGC 3 cut(s) 389, 513, 586
BccI CCATC 2 cut(s) 524, 548
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 2 cut(s) 397, 686
BcnI CCSGG 2 cut(s) 154, 160
BcoDI GTCTC 2 cut(s) 414, 604
BfoI RGCGCY 3 cut(s) 370, 403, 537
BfuAI ACCTGC 1 cut(s) 655
BisI GCNGC 6 cut(s) 342, 403, 499, 502, 600, 672
BlsI GCNGC 6 cut(s) 343, 404, 500, 503, 601, 673
Bme1390I CCNGG 4 cut(s) 154, 160, 397, 686
Bme18I GGWCC 2 cut(s) 156, 162
BmgBI CACGTC 1 cut(s) 648
BmgT120I GGNCC 3 cut(s) 156, 162, 688
BmiI GGNNCC 4 cut(s) 57, 158, 164, 535
BmrFI CCNGG 4 cut(s) 154, 160, 397, 686
BpiI GAAGAC 2 cut(s) 424, 550
BpmI CTGGAG 2 cut(s) 202, 247
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 154, 160
BsaHI GRCGYC 2 cut(s) 534, 653
BsaJI CCNNGG 3 cut(s) 412, 684, 685
BsaXI ACNNNNNCTCC 6 cut(s) 227, 257, 470, 497, 500, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 396, 685
Bse118I RCCGGY 1 cut(s) 480
BseBI CCWGG 2 cut(s) 397, 686
BseDI CCNNGG 3 cut(s) 412, 684, 685
BseLI CCNNNNNNNGG 3 cut(s) 159, 396, 685
BseMII CTCAG 1 cut(s) 599
BseRI GAGGAG 7 cut(s) 106, 184, 187, 190, 235, 367, 370
BseXI GCAGC 3 cut(s) 389, 513, 586
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 388
BshFI GGCC 2 cut(s) 92, 690
BshNI GGYRCC 2 cut(s) 55, 533
BsiSI CCGG 4 cut(s) 154, 160, 481, 546
BslI CCNNNNNNNGG 3 cut(s) 159, 396, 685
BsmAI GTCTC 2 cut(s) 414, 604
BsmBI CGTCTC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 2 cut(s) 92, 690
Bsp119I TTCGAA 1 cut(s) 330
BspACI CCGC 7 cut(s) 102, 150, 252, 342, 448, 499, 672
BspANI GGCC 2 cut(s) 92, 690
BspCNI CTCAG 1 cut(s) 600
BspLI GGNNCC 4 cut(s) 57, 158, 164, 535
BspMI ACCTGC 1 cut(s) 655
BspQI GCTCTTC 1 cut(s) 533
BspT104I TTCGAA 1 cut(s) 330
BspT107I GGYRCC 2 cut(s) 55, 533
BsrFI RCCGGY 1 cut(s) 480
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 412, 684, 685
BssNI GRCGYC 2 cut(s) 534, 653
Bst2UI CCWGG 2 cut(s) 397, 686
Bst4CI ACNGT 2 cut(s) 51, 637
Bst6I CTCTTC 3 cut(s) 14, 332, 533
BstACI GRCGYC 2 cut(s) 534, 653
BstBI TTCGAA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 283, 592
BstDEI CTNAG 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 412
BstENI CCTNNNNNAGG 1 cut(s) 683
BstH2I RGCGCY 3 cut(s) 370, 403, 537
BstHHI GCGC 5 cut(s) 341, 369, 402, 536, 590
BstMAI GTCTC 2 cut(s) 414, 604
BstMWI GCNNNNNNNGC 4 cut(s) 447, 490, 596, 680
BstNI CCWGG 2 cut(s) 397, 686
BstSCI CCNGG 4 cut(s) 152, 158, 395, 684
BstV1I GCAGC 3 cut(s) 389, 513, 586
BstV2I GAAGAC 2 cut(s) 424, 550
BsuRI GGCC 2 cut(s) 92, 690
BtgI CCRYGG 1 cut(s) 412
BtrI CACGTC 1 cut(s) 648
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 2 cut(s) 283, 592
CfoI GCGC 5 cut(s) 341, 369, 402, 536, 590
Cfr10I RCCGGY 1 cut(s) 480
Cfr13I GGNCC 3 cut(s) 156, 162, 688
CseI GACGC 2 cut(s) 431, 642
Csp6I GTAC 2 cut(s) 47, 168
CviAII CATG 2 cut(s) 44, 490
CviQI GTAC 2 cut(s) 47, 168
DdeI CTNAG 1 cut(s) 608
DinI GGCGCC 1 cut(s) 535
DrdI GACNNNNNNGTC 2 cut(s) 428, 652
DseDI GACNNNNNNGTC 2 cut(s) 428, 652
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 14, 332, 533
EarI CTCTTC 3 cut(s) 14, 332, 533
EciI GGCGGA 2 cut(s) 139, 437
Eco47I GGWCC 2 cut(s) 156, 162
Eco47III AGCGCT 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 355
EcoNI CCTNNNNNAGG 1 cut(s) 683
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 395, 684
EgeI GGCGCC 1 cut(s) 535
EheI GGCGCC 1 cut(s) 535
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 2 cut(s) 47, 493
FaiI YATR 4 cut(s) 45, 72, 491, 699
FatI CATG 2 cut(s) 43, 489
FblI GTMKAC 2 cut(s) 96, 567
Fnu4HI GCNGC 6 cut(s) 342, 403, 499, 502, 600, 672
Fsp4HI GCNGC 6 cut(s) 342, 403, 499, 502, 600, 672
GlaI GCGC 5 cut(s) 340, 368, 401, 535, 589
GluI GCNGC 6 cut(s) 342, 403, 499, 502, 600, 672
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 2 cut(s) 202, 247
HaeII RGCGCY 3 cut(s) 370, 403, 537
HaeIII GGCC 2 cut(s) 92, 690
HapII CCGG 4 cut(s) 154, 160, 481, 546
HgaI GACGC 2 cut(s) 431, 642
HhaI GCGC 5 cut(s) 341, 369, 402, 536, 590
Hin1I GRCGYC 2 cut(s) 534, 653
Hin1II CATG 2 cut(s) 47, 493
Hin6I GCGC 5 cut(s) 339, 367, 400, 534, 588
HinP1I GCGC 5 cut(s) 339, 367, 400, 534, 588
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 146
HpaII CCGG 4 cut(s) 154, 160, 481, 546
HphI GGTGA 3 cut(s) 181, 379, 625
Hpy166II GTNNAC 2 cut(s) 97, 568
Hpy188I TCNGA 2 cut(s) 145, 609
Hpy188III TCNNGA 3 cut(s) 436, 475, 657
Hpy8I GTNNAC 2 cut(s) 97, 568
Hpy99I CGWCG 2 cut(s) 98, 649
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 51, 637
HpyCH4IV ACGT 2 cut(s) 555, 647
HpyCH4V TGCA 2 cut(s) 405, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 447, 490, 596, 680
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 2 cut(s) 555, 647
Hsp92I GRCGYC 2 cut(s) 534, 653
Hsp92II CATG 2 cut(s) 47, 493
HspAI GCGC 5 cut(s) 339, 367, 400, 534, 588
KasI GGCGCC 1 cut(s) 533
LguI GCTCTTC 1 cut(s) 533
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 3 cut(s) 389, 513, 586
MaeII ACGT 2 cut(s) 555, 647
MboII GAAGA 4 cut(s) 319, 424, 520, 550
MfeI CAATTG 1 cut(s) 137
MluCI AATT 4 cut(s) 137, 572, 628, 694
Mly113I GGCGCC 1 cut(s) 534
MspI CCGG 4 cut(s) 154, 160, 481, 546
MspR9I CCNGG 4 cut(s) 154, 160, 397, 686
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 666
MvaI CCWGG 2 cut(s) 397, 686
MwoI GCNNNNNNNGC 4 cut(s) 447, 490, 596, 680
NarI GGCGCC 1 cut(s) 534
NciI CCSGG 2 cut(s) 154, 160
NlaIII CATG 2 cut(s) 47, 493
NlaIV GGNNCC 4 cut(s) 57, 158, 164, 535
NspV TTCGAA 1 cut(s) 330
PasI CCCWGGG 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 533
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 650
PctI GAATGC 1 cut(s) 666
PfeI GAWTC 1 cut(s) 146
PflFI GACNNNGTC 2 cut(s) 425, 554
PkrI GCNGC 6 cut(s) 343, 404, 500, 503, 601, 673
PluTI GGCGCC 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 395, 684
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 2 cut(s) 395, 684
PspN4I GGNNCC 4 cut(s) 57, 158, 164, 535
PspPI GGNCC 3 cut(s) 156, 162, 688
PsyI GACNNNGTC 2 cut(s) 425, 554
RsaI GTAC 2 cut(s) 48, 169
RsaNI GTAC 2 cut(s) 47, 168
SalI GTCGAC 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 533
SatI GCNGC 6 cut(s) 342, 403, 499, 502, 600, 672
Sau96I GGNCC 3 cut(s) 156, 162, 688
ScrFI CCNGG 4 cut(s) 154, 160, 397, 686
SfoI GGCGCC 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 2 cut(s) 156, 162
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 4 cut(s) 137, 572, 628, 694
SsiI CCGC 7 cut(s) 102, 150, 252, 342, 448, 499, 672
SspDI GGCGCC 1 cut(s) 533
StyD4I CCNGG 4 cut(s) 152, 158, 395, 684
TaaI ACNGT 2 cut(s) 51, 637
TaiI ACGT 2 cut(s) 558, 650
TaqI TCGA 5 cut(s) 96, 124, 330, 459, 644
TasI AATT 4 cut(s) 137, 572, 628, 694
TatI WGTACW 1 cut(s) 46
TauI GCSGC 3 cut(s) 344, 501, 674
TfiI GAWTC 1 cut(s) 146
TseI GCWGC 3 cut(s) 402, 501, 599
TspGWI ACGGA 1 cut(s) 401
Tth111I GACNNNGTC 2 cut(s) 425, 554
VpaK11BI GGWCC 2 cut(s) 156, 162
XagI CCTNNNNNAGG 1 cut(s) 683
XapI RAATTY 1 cut(s) 572
XmiI GTMKAC 2 cut(s) 96, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.