Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0023510

Physical Location & Seq

Genomic Coordinates Forward (+)

16497699 .. 16500311

Gene Structure 2613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGGCTTCAACACCACTCTAGTCGTGAACCAGAGTTCCGGTTGGAGTACAATGGCAAAGTTGAGCACACTAATGAGGTCAACATTGCTGGTGGAGGTAAGGGGATTTCTAACACCCCATTGACTTTGTTAGTGAAGAAGAATGGTGTTCCGGATTTGACTATGGTTGATCTCCCTGGAATCACTAGAGTTCCTGTTCATGGTCAGCCTGAGGATATCTATGATCAAATCAAAGATATGATCATGCAGTATATCAAGCCTGAAGAGAGCATCATTCTCAATGTGTTGTCTGCTACTGTTCATTTTACAACTTGTGAATCCATCAGGATGTCACAGAGTGTGGATAGAGCTGGTGATAGAACTCTGGTTGTGGTCACAAAGGTTGATAAGGCGCCCGAAGGACTAGTAGAGAAGGTTACAGCAGATGATGTTAGTATTGGTCTTGGTTATGTGTGTGTGAGGAACCGGATTGAAGATGAAACTTATGAGGAGGCAAGGGCTATATCTCAACAACTTTTTCAAACTCATCCTTTGCTGTCCAAGATTGACAAATCTATGGTTGGAATTCCAGTTCTGGCTCAAAAGTTGGTGCAGATTCAAGCTTCTAGCATAGCTAGAAACATGCCAGACATTGTCAAGAAGATAAATGACAAGCTGAATTCTTGCCTTTTGGAGTTGAACAAAATGCCAAAGAGTCTATCACCTGTTGTTAAAGCCATGACCGCGTTTATGCAGATCATCGGATCATCAAAAGAATCGCTTAGGAAAATTCTGGTGAGAGGAGAATTTGATGAATTCCCTGATGACGAGCACATGCATTGCACTGCTCGGCATTATGAGATGCTCAATCAGTACTCAGATCAACTTCACAGGTGTGAAGAAAGTGACACAAAAAGTAACTTCTTAGTAGTGGAGATCAAGCTTTTGGAGGAAGCAAAAGGGAAAAGTGAACGGAATCTCGAGCATACCTATTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

326

Amino Acids

36.89

Weight (kDa)

5.92

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	25 - 128	9.8e-20	Dynamin family
Dynamin_M	PF01031	135 - 316	5.3e-33	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023510)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG078300 Rh1CG078500 Rh1DG084700 Rh2AG323500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	391
AccII	CGCG	1 cut(s)	725
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	1 cut(s)	723
AclWI	GGATC	1 cut(s)	751
AcsI	RAATTY	5 cut(s)	564, 658, 768, 785, 794
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	50, 854
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	11, 473, 521, 599, 679
AhlI	ACTAGT	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	873
AloI	GAACNNNNNNTCC	4 cut(s)	21, 53, 555, 587
AluBI	AGCT	5 cut(s)	350, 602, 614, 655, 922
AluI	AGCT	5 cut(s)	350, 602, 614, 655, 922
Alw21I	GWGCWC	2 cut(s)	69, 813
AlwI	GGATC	1 cut(s)	751
Ama87I	CYCGRG	1 cut(s)	959
Aor13HI	TCCGGA	1 cut(s)	151
ApoI	RAATTY	5 cut(s)	564, 658, 768, 785, 794
AspLEI	GCGC	1 cut(s)	394
AsuHPI	GGTGA	3 cut(s)	365, 693, 787
AvaI	CYCGRG	1 cut(s)	959
AxyI	CCTNAGG	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	391
Bbv12I	GWGCWC	2 cut(s)	69, 813
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	177
BclI	TGATCA	2 cut(s)	223, 240
BcuI	ACTAGT	1 cut(s)	403
BfaI	CTAG	5 cut(s)	21, 186, 404, 606, 615
BfoI	RGCGCY	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	959
BmiI	GGNNCC	2 cut(s)	393, 464
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	279, 831
Bpu10I	CCTNAGC	1 cut(s)	761
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	3 cut(s)	39, 151, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	569
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	2 cut(s)	84, 817
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	3 cut(s)	333, 526, 981
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	84, 817
BseMII	CTCAG	2 cut(s)	201, 870
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	2 cut(s)	503, 795
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	725
BshNI	GGYRCC	1 cut(s)	391
BsiHKAI	GWGCWC	2 cut(s)	69, 813
BsiHKCI	CYCGRG	1 cut(s)	959
BsiSI	CCGG	3 cut(s)	40, 152, 466
BslI	CCNNNNNNNGG	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	959
Bsp1286I	GDGCHC	2 cut(s)	69, 813
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
BspACI	CCGC	1 cut(s)	723
BspCNI	CTCAG	2 cut(s)	202, 869
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	2 cut(s)	393, 464
BspPI	GGATC	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	391
BsrDI	GCAATG	2 cut(s)	84, 817
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
BssNI	GRCGYC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	392
BstDEI	CTNAG	4 cut(s)	210, 761, 856, 904
BstF5I	GGATG	3 cut(s)	333, 526, 981
BstFNI	CGCG	1 cut(s)	725
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	7 cut(s)	172, 226, 243, 738, 746, 862, 918
BstMBI	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	1 cut(s)	177
BstNSI	RCATGY	2 cut(s)	625, 817
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	333, 526, 981
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	822
CfoI	GCGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	49, 853
CviAII	CATG	5 cut(s)	200, 244, 622, 718, 814
CviQI	GTAC	2 cut(s)	49, 853
DdeI	CTNAG	4 cut(s)	210, 761, 856, 904
DinI	GGCGCC	1 cut(s)	393
DpnI	GATC	7 cut(s)	171, 225, 242, 737, 745, 861, 917
DpnII	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
DraIII	CACNNNGTG	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	959
EcoRI	GAATTC	3 cut(s)	564, 658, 794
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	819
EgeI	GGCGCC	1 cut(s)	393
EheI	GGCGCC	1 cut(s)	393
FaeI	CATG	5 cut(s)	203, 247, 625, 721, 817
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FatI	CATG	5 cut(s)	199, 243, 621, 717, 813
FbaI	TGATCA	2 cut(s)	223, 240
FokI	GGATG	2 cut(s)	340, 513
FspBI	CTAG	5 cut(s)	21, 186, 404, 606, 615
GlaI	GCGC	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	395
HapII	CCGG	3 cut(s)	40, 152, 466
HhaI	GCGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	5 cut(s)	203, 247, 625, 721, 817
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	2 cut(s)	600, 920
HinfI	GANTC	6 cut(s)	180, 317, 595, 694, 755, 955
HpaII	CCGG	3 cut(s)	40, 152, 466
HphI	GGTGA	3 cut(s)	365, 693, 787
Hpy166II	GTNNAC	3 cut(s)	29, 82, 950
Hpy188I	TCNGA	2 cut(s)	743, 859
Hpy188III	TCNNGA	5 cut(s)	26, 152, 325, 637, 959
Hpy8I	GTNNAC	3 cut(s)	29, 82, 950
HpyAV	CCTTC	2 cut(s)	392, 406
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	5 cut(s)	247, 592, 733, 817, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	4 cut(s)	210, 761, 856, 904
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	5 cut(s)	203, 247, 625, 721, 817
HspAI	GCGC	1 cut(s)	392
KasI	GGCGCC	1 cut(s)	391
Kpn2I	TCCGGA	1 cut(s)	151
Ksp22I	TGATCA	2 cut(s)	223, 240
Kzo9I	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
LweI	GCATC	2 cut(s)	279, 831
MaeI	CTAG	5 cut(s)	21, 186, 404, 606, 615
MaeIII	GTNAC	5 cut(s)	330, 373, 415, 884, 896
MalI	GATC	7 cut(s)	171, 225, 242, 737, 745, 861, 917
MboI	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
MboII	GAAGA	6 cut(s)	148, 151, 275, 485, 652, 890
MhlI	GDGCHC	2 cut(s)	69, 813
MluCI	AATT	5 cut(s)	564, 658, 768, 785, 794
Mly113I	GGCGCC	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	24, 541
MnlI	CCTC	8 cut(s)	70, 89, 205, 453, 481, 484, 773, 922
Mph1103I	ATGCAT	1 cut(s)	819
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	1 cut(s)	711
MslI	CAYNNNNRTG	3 cut(s)	72, 326, 873
MspI	CCGG	3 cut(s)	40, 152, 466
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	1 cut(s)	722
NarI	GGCGCC	1 cut(s)	392
NdeII	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
NlaIII	CATG	5 cut(s)	203, 247, 625, 721, 817
NlaIV	GGNNCC	2 cut(s)	393, 464
NmeAIII	GCCGAG	1 cut(s)	808
NmuCI	GTSAC	3 cut(s)	330, 373, 884
NsiI	ATGCAT	1 cut(s)	819
NspI	RCATGY	2 cut(s)	625, 817
OliI	CACNNNNGTG	1 cut(s)	873
PaeR7I	CTCGAG	1 cut(s)	959
PfeI	GAWTC	5 cut(s)	180, 317, 595, 755, 955
PflFI	GACNNNGTC	1 cut(s)	632
PleI	GAGTC	1 cut(s)	702
PluTI	GGCGCC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	393, 464
PsyI	GACNNNGTC	1 cut(s)	632
RsaI	GTAC	2 cut(s)	50, 854
RsaNI	GTAC	2 cut(s)	49, 853
RseI	CAYNNNNRTG	3 cut(s)	72, 326, 873
SaqAI	TTAA	1 cut(s)	711
Sau3AI	GATC	7 cut(s)	169, 223, 240, 735, 743, 859, 915
ScaI	AGTACT	1 cut(s)	854
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	69, 813
SfaNI	GCATC	2 cut(s)	279, 831
SfoI	GGCGCC	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	959
SlaI	CTCGAG	1 cut(s)	959
SmiMI	CAYNNNNRTG	3 cut(s)	72, 326, 873
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
SpeI	ACTAGT	1 cut(s)	403
Sse9I	AATT	5 cut(s)	564, 658, 768, 785, 794
SsiI	CCGC	1 cut(s)	723
SspDI	GGCGCC	1 cut(s)	391
SspMI	CTAG	5 cut(s)	21, 186, 404, 606, 615
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	960
TasI	AATT	5 cut(s)	564, 658, 768, 785, 794
TatI	WGTACW	2 cut(s)	48, 852
TfiI	GAWTC	5 cut(s)	180, 317, 595, 755, 955
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	3 cut(s)	330, 373, 884
Tsp45I	GTSAC	3 cut(s)	330, 373, 884
TspDTI	ATGAA	4 cut(s)	188, 290, 492, 807
TspGWI	ACGGA	1 cut(s)	967
TspRI	CASTG	1 cut(s)	829
Tth111I	GACNNNGTC	1 cut(s)	632
XapI	RAATTY	5 cut(s)	564, 658, 768, 785, 794
XceI	RCATGY	2 cut(s)	625, 817
XhoI	CTCGAG	1 cut(s)	959
XspI	CTAG	5 cut(s)	21, 186, 404, 606, 615
ZrmI	AGTACT	1 cut(s)	854
Zsp2I	ATGCAT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.