Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0023510

Physical Location & Seq

Genomic Coordinates Reverse (-)

46499934 .. 46500902

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG323500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGGCTTCAACACCACTCTAGTCCTGAACCAGAGTTCCAGTTGGAGTACAAAGGCAAAGTTGAGCACACTGATGAGGTCAACATTGCTGATGATATTGTCAATGCCACCAATGTTATTGCTGGTGGAGCTAAGGGAATTTCTAACACCCCATTGACTCTGTTGGTGAAAAAGAATGGTGTTCCTGATTTGACTATGGTTGATCTCCCTGGAATCACTAGAGTTCCTGTTCATGGTCAGCCTGAGGATATCTATGATCAAATCAAAGACATGATCATGCATTATATAAAGCCTGAAGAGAGCATCATTCTCAATGTGTTGTCTGCTACTGTCGATTTTACAACTTGTGAATCCATCAGGATGTCACAGAGTGTGGATAAAGCTGGTGATAGGACTCTGGCTGTGGTCACAAAGGTTGATAAGGCGCCCGAAGGACTATTAGAGAAGGTTACAGCAGATGATGTTAGTATTGGTCTTGGTTATGTTTGTGTGAGGAACCGGATTGGAGATGAAACTAATGAGGAGGCAAGGGCGGCTATATCTCAACAACTTTTTCAAACTCATCCTTTGCTGTCCAAGATTGATAAATCTATGGTTGGAATTCCAGTTCTGGCTCAAAAGTTGGTGCAAATTCAAGCTTCTAGCATAGCTAGAAACTTGCCAGACATCGTCAAGAAGATAAATGACAAGCTGAGTTCTTGTCTTTTGGAGTTGAACAAGATGCCAAAGAAACTGTCATCTGTTAGTGAAGCCATGACCACGTTTATGCAGATCATCGGATCATCGAAAGAATCGCTTAGGAAAATTCTGGTGAGAGGAGAATTTGATGAATTCCCTGATGACAAGCGCATGCATTGCACCGCTCGGCTTTTTGAGATGCTCAATCAGTACTCAGATCAACTTCAAAAGTGTGAAGAAAGTGACCCGAAAAAGAACTTCTTAGTAGAGGAGATCAAGATTAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

322

Amino Acids

35.98

Weight (kDa)

5.62

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	18 - 139	1.1e-21	Dynamin family
Dynamin_M	PF01031	146 - 319	3e-33	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023510)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG078300 Rh1CG078500 Rh1DG084700 Rh2AG323500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	863
AciI	CCGC	2 cut(s)	533, 861
AclWI	GGATC	1 cut(s)	787
AcsI	RAATTY	6 cut(s)	138, 600, 630, 804, 821, 830
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	425
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	50, 890
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	5 cut(s)	11, 557, 635, 715, 905
AjnI	CCWGG	1 cut(s)	208
AloI	GAACNNNNNNTCC	4 cut(s)	21, 53, 591, 623
AluBI	AGCT	5 cut(s)	131, 383, 638, 650, 691
AluI	AGCT	5 cut(s)	131, 383, 638, 650, 691
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	787
ApoI	RAATTY	6 cut(s)	138, 600, 630, 804, 821, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
AspLEI	GCGC	2 cut(s)	427, 849
AsuHPI	GGTGA	3 cut(s)	178, 398, 823
AxyI	CCTNAGG	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	2 cut(s)	256, 273
BfaI	CTAG	4 cut(s)	21, 219, 642, 651
BfoI	RGCGCY	1 cut(s)	428
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	1 cut(s)	890
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	426, 497
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	312, 711, 867
Bpu10I	CCTNAGC	2 cut(s)	132, 797
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	40, 605
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	84, 853
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	366, 562
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	2 cut(s)	84, 853
BseMII	CTCAG	3 cut(s)	234, 683, 906
BseNI	ACTGG	2 cut(s)	40, 605
BseRI	GAGGAG	3 cut(s)	536, 831, 962
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
BspACI	CCGC	2 cut(s)	533, 861
BspCNI	CTCAG	3 cut(s)	235, 684, 905
BspLI	GGNNCC	2 cut(s)	426, 497
BspPI	GGATC	1 cut(s)	787
BspT107I	GGYRCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	863
BsrDI	GCAATG	2 cut(s)	84, 853
BsrI	ACTGG	2 cut(s)	40, 605
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
BssNI	GRCGYC	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	331, 735
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	855
BstC8I	GCNNGC	1 cut(s)	851
BstDEI	CTNAG	6 cut(s)	132, 243, 692, 797, 892, 940
BstF5I	GGATG	2 cut(s)	366, 562
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	2 cut(s)	427, 849
BstKTI	GATC	7 cut(s)	205, 259, 276, 774, 782, 898, 954
BstMBI	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 533, 855
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	366, 562
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	851
CfoI	GCGC	2 cut(s)	427, 849
Csp6I	GTAC	2 cut(s)	49, 889
CviAII	CATG	5 cut(s)	233, 271, 277, 754, 850
CviQI	GTAC	2 cut(s)	49, 889
DdeI	CTNAG	6 cut(s)	132, 243, 692, 797, 892, 940
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	7 cut(s)	204, 258, 275, 773, 781, 897, 953
DpnII	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
DraIII	CACNNNGTG	1 cut(s)	371
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	243
EcoRI	GAATTC	2 cut(s)	600, 830
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	250
EcoT22I	ATGCAT	2 cut(s)	282, 855
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
FaeI	CATG	5 cut(s)	236, 274, 280, 757, 853
FalI	AAGNNNNNCTT	4 cut(s)	780, 812, 923, 955
FatI	CATG	5 cut(s)	232, 270, 276, 753, 849
FbaI	TGATCA	2 cut(s)	256, 273
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	2 cut(s)	373, 549
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	4 cut(s)	21, 219, 642, 651
GlaI	GCGC	2 cut(s)	426, 848
GluI	GCNGC	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	428
HapII	CCGG	1 cut(s)	499
HhaI	GCGC	2 cut(s)	427, 849
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	5 cut(s)	236, 274, 280, 757, 853
Hin6I	GCGC	2 cut(s)	425, 847
HinP1I	GCGC	2 cut(s)	425, 847
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	5 cut(s)	157, 213, 350, 394, 791
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	3 cut(s)	178, 398, 823
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	779, 895
Hpy188III	TCNNGA	5 cut(s)	26, 185, 358, 673, 955
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	425, 439
HpyCH4III	ACNGT	2 cut(s)	331, 735
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	5 cut(s)	280, 628, 769, 853, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 533, 855
HpyF3I	CTNAG	6 cut(s)	132, 243, 692, 797, 892, 940
HpySE526I	ACGT	1 cut(s)	761
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	5 cut(s)	236, 274, 280, 757, 853
HspAI	GCGC	2 cut(s)	425, 847
KasI	GGCGCC	1 cut(s)	424
Ksp22I	TGATCA	2 cut(s)	256, 273
Kzo9I	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
LmnI	GCTCC	1 cut(s)	128
LweI	GCATC	3 cut(s)	312, 711, 867
MaeI	CTAG	4 cut(s)	21, 219, 642, 651
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	4 cut(s)	363, 406, 448, 920
MalI	GATC	7 cut(s)	204, 258, 275, 773, 781, 897, 953
MbiI	CCGCTC	1 cut(s)	863
MboI	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
MboII	GAAGA	3 cut(s)	308, 688, 926
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	6 cut(s)	138, 600, 630, 804, 821, 830
Mly113I	GGCGCC	1 cut(s)	425
MlyI	GAGTC	2 cut(s)	151, 388
MmeI	TCCRAC	2 cut(s)	24, 577
MnlI	CCTC	7 cut(s)	70, 238, 486, 514, 517, 809, 940
Mph1103I	ATGCAT	2 cut(s)	282, 855
MslI	CAYNNNNRTG	4 cut(s)	72, 275, 359, 764
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	128, 533, 855
NarI	GGCGCC	1 cut(s)	425
NdeII	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
NlaIII	CATG	5 cut(s)	236, 274, 280, 757, 853
NlaIV	GGNNCC	2 cut(s)	426, 497
NmeAIII	GCCGAG	1 cut(s)	844
NmuCI	GTSAC	3 cut(s)	363, 406, 920
NsiI	ATGCAT	2 cut(s)	282, 855
NspI	RCATGY	1 cut(s)	853
PaeI	GCATGC	1 cut(s)	853
PfeI	GAWTC	3 cut(s)	213, 350, 791
PflFI	GACNNNGTC	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	535
PleI	GAGTC	2 cut(s)	151, 388
PluTI	GGCGCC	1 cut(s)	428
PpsI	GAGTC	2 cut(s)	151, 388
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	426, 497
PsyI	GACNNNGTC	1 cut(s)	668
RsaI	GTAC	2 cut(s)	50, 890
RsaNI	GTAC	2 cut(s)	49, 889
RseI	CAYNNNNRTG	4 cut(s)	72, 275, 359, 764
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	7 cut(s)	202, 256, 273, 771, 779, 895, 951
ScaI	AGTACT	1 cut(s)	890
SchI	GAGTC	2 cut(s)	151, 388
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	3 cut(s)	312, 711, 867
SfoI	GGCGCC	1 cut(s)	426
SmiMI	CAYNNNNRTG	4 cut(s)	72, 275, 359, 764
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	6 cut(s)	138, 600, 630, 804, 821, 830
SsiI	CCGC	2 cut(s)	533, 861
SspDI	GGCGCC	1 cut(s)	424
SspMI	CTAG	4 cut(s)	21, 219, 642, 651
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	331, 735
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	2 cut(s)	333, 785
TasI	AATT	6 cut(s)	138, 600, 630, 804, 821, 830
TatI	WGTACW	2 cut(s)	48, 888
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	3 cut(s)	213, 350, 791
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	3 cut(s)	363, 406, 920
Tsp45I	GTSAC	3 cut(s)	363, 406, 920
TspDTI	ATGAA	3 cut(s)	221, 525, 843
TspRI	CASTG	1 cut(s)	76
Tth111I	GACNNNGTC	1 cut(s)	668
XapI	RAATTY	6 cut(s)	138, 600, 630, 804, 821, 830
XceI	RCATGY	1 cut(s)	853
XspI	CTAG	4 cut(s)	21, 219, 642, 651
ZrmI	AGTACT	1 cut(s)	890
Zsp2I	ATGCAT	2 cut(s)	282, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.