Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0023510

Physical Location & Seq

Genomic Coordinates Forward (+)

15700094 .. 15701955

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGGCTTCAACACCACTCTAGTCCTGAACCAAAGTTCCTGTTGGAGTACAACGGCAAAGTTGAGCACACTGATGAGGTCAACATTACTGATGATATTGTCAATGCCACCAATGCTATTGTTGGTGGAGGTAAGGGGATTTCTAATACCCCATTGACTTTGTTAGTGAAGAAGAATGGTGTTCCGGATTTGACTATGGTTGATCTCCCTGGAATCACTAGAGTTCCTATTCATGGTCAGCCAGAGGATATCTATGATCAAATCAAAGATATGATCATGCAGTATATCAAGCCTGAAGAGAGCATCATTCTCAATGTGTTGTCTGCTACTGTTGATTTTACAACTTGTGAATCCATCAGGATGTCACAGAGTGTGGATAGAGCTGGTGATAGAACTCTGGCTGTGGTCACAAAGGTCGATAAGGCACCCGAAGGACTATTAGAGAAGGTTACAGCAGACGATGTTAGTATTGGTCTTGGTTATGTCTGTGTGAGGAACCGGATTGGAGATGAAACTTATGAGGAGGCAAGGGCAATATCTCAACAACTTTTTCAAACTCATCCTTTGCTGTCCAAGATTGACAAATCTATGGTTGGAATTCCAGTTCTGGCTCAAAAGTTGGTGCAGATTCAAGCTTCTAGCATAGCTAGAAACTTGCCAGACATTGTCAAGAAGATAAATGACAAGCTGAGTTCTTGTCTTCTGGAGCTGAACAAAATGCCAAAGAAACTGTCATCTGTTGCTGAAGCCATGACTGCGTTTATGCAGATCATCGGATCATCAAAAGAATCTCTTAGGAAAATTCTGGTGAGAGGAGAATTTGATGAATTCCCTGATGACAAGCGCATGCATTGCACTGCTCGGCTTTATGAGATGCTCAGTCAGTACTCAGATCAACTTCACAAGTGTGAAGAATGTGACCCAAAAAGTAACTTCTTAGTAGAGGAGATCAAGATTTTGGAGGAAGCAAAAGGGAAAAGTGAAGGGAATTTCGAGTATGCACCAGAAGAGCTGGCCTTGAGTGTTTCGAAACTTGTGAACCAAGACATGGAGAGTGAGATTGTGAATGAGTTGATGGGACCAAATTGTTGTGGTGGGATTGAGAAAATGCTGGAGGAATCTCCAGCAGTTGCCATCAAGCGTGAGAAGCTGGTAAAGAGTATCAAAAAGCTTAGGGATTCCAAAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0044424 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 ko05162 ko05164 ko05165 map04139 map04214 map04217 map04621 map04668 map05162 map05164 map05165

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

397

Amino Acids

44.2

Weight (kDa)

5.28

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	20 - 139	7.4e-21	Dynamin family
Dynamin_M	PF01031	146 - 331	2.8e-37	Dynamin central region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023510)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG078300 Rh1CG078500 Rh1DG084700 Rh2AG323500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	1048
AccIII	TCCGGA	1 cut(s)	184
AclWI	GGATC	1 cut(s)	784
AcsI	RAATTY	5 cut(s)	597, 801, 818, 827, 988
AcuI	CTGAAG	2 cut(s)	315, 765
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	2 cut(s)	50, 887
AfiI	CCNNNNNNNGG	2 cut(s)	233, 1048
AgsI	TTSAA	3 cut(s)	11, 554, 632
AjnI	CCWGG	1 cut(s)	208
AleI	CACNNNNGTG	1 cut(s)	906
AloI	GAACNNNNNNTCC	4 cut(s)	21, 53, 588, 620
AluBI	AGCT	8 cut(s)	383, 635, 647, 688, 709, 1012, 1150, 1171
AluI	AGCT	8 cut(s)	383, 635, 647, 688, 709, 1012, 1150, 1171
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	784
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	1014
ApoI	RAATTY	5 cut(s)	597, 801, 818, 827, 988
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspLEI	GCGC	1 cut(s)	846
AspS9I	GGNCC	1 cut(s)	1079
AsuHPI	GGTGA	2 cut(s)	398, 820
AsuII	TTCGAA	1 cut(s)	1028
AvaII	GGWCC	1 cut(s)	1079
BanI	GGYRCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	3 cut(s)	362, 1069, 1142
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	2 cut(s)	256, 273
BfaI	CTAG	4 cut(s)	21, 219, 639, 648
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	1079
BmgT120I	GGNCC	1 cut(s)	1079
BmiI	GGNNCC	3 cut(s)	426, 497, 1080
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	312, 864
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	3 cut(s)	725, 1107, 1133
Bpu10I	CCTNAGC	1 cut(s)	1172
Bpu14I	TTCGAA	1 cut(s)	1028
BpuEI	CTTGAG	1 cut(s)	1039
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	184, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 1048
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	850
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	366, 559
BseLI	CCNNNNNNNGG	2 cut(s)	233, 1048
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	3 cut(s)	680, 892, 903
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	3 cut(s)	536, 828, 959
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	1016
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	185, 499
BslFI	GGGAC	1 cut(s)	1092
BslI	CCNNNNNNNGG	2 cut(s)	233, 1048
BsmFI	GGGAC	1 cut(s)	1092
BsnI	GGCC	1 cut(s)	1016
Bsp119I	TTCGAA	1 cut(s)	1028
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
BspANI	GGCC	1 cut(s)	1016
BspCNI	CTCAG	3 cut(s)	681, 891, 902
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	426, 497, 1080
BspPI	GGATC	1 cut(s)	784
BspQI	GCTCTTC	1 cut(s)	1002
BspT104I	TTCGAA	1 cut(s)	1028
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	850
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	331, 732
Bst6I	CTCTTC	2 cut(s)	291, 1002
BstAPI	GCANNNNNTGC	1 cut(s)	852
BstBI	TTCGAA	1 cut(s)	1028
BstC8I	GCNNGC	2 cut(s)	848, 1014
BstDEI	CTNAG	6 cut(s)	689, 794, 878, 889, 937, 1172
BstF5I	GGATG	2 cut(s)	366, 559
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	7 cut(s)	205, 259, 276, 771, 779, 895, 951
BstMBI	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 755, 852, 1147
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	1016
BtsCI	GGATG	2 cut(s)	366, 559
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	69, 855
Cac8I	GCNNGC	2 cut(s)	848, 1014
CfoI	GCGC	1 cut(s)	846
Cfr13I	GGNCC	1 cut(s)	1079
Csp6I	GTAC	2 cut(s)	49, 886
CviAII	CATG	5 cut(s)	233, 277, 751, 847, 1048
CviQI	GTAC	2 cut(s)	49, 886
DdeI	CTNAG	6 cut(s)	689, 794, 878, 889, 937, 1172
DpnI	GATC	7 cut(s)	204, 258, 275, 770, 778, 894, 950
DpnII	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
DraIII	CACNNNGTG	1 cut(s)	371
Eam1104I	CTCTTC	2 cut(s)	291, 1002
EarI	CTCTTC	2 cut(s)	291, 1002
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	1079
Eco57I	CTGAAG	2 cut(s)	315, 765
EcoRI	GAATTC	2 cut(s)	597, 827
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	852
FaeI	CATG	5 cut(s)	236, 280, 754, 850, 1051
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	1092
FatI	CATG	5 cut(s)	232, 276, 750, 846, 1047
FbaI	TGATCA	2 cut(s)	256, 273
FokI	GGATG	2 cut(s)	373, 546
FspBI	CTAG	4 cut(s)	21, 219, 639, 648
GlaI	GCGC	1 cut(s)	845
GsuI	CTGGAG	3 cut(s)	725, 1107, 1133
HaeIII	GGCC	1 cut(s)	1016
HapII	CCGG	2 cut(s)	185, 499
HhaI	GCGC	1 cut(s)	846
Hin1II	CATG	5 cut(s)	236, 280, 754, 850, 1051
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	2 cut(s)	633, 1169
HinfI	GANTC	6 cut(s)	213, 350, 628, 788, 1118, 1178
HpaII	CCGG	2 cut(s)	185, 499
HphI	GGTGA	2 cut(s)	398, 820
Hpy166II	GTNNAC	2 cut(s)	82, 1039
Hpy188I	TCNGA	2 cut(s)	776, 892
Hpy188III	TCNNGA	6 cut(s)	26, 185, 358, 670, 704, 952
Hpy8I	GTNNAC	2 cut(s)	82, 1039
HpyAV	CCTTC	3 cut(s)	425, 439, 977
HpyCH4III	ACNGT	2 cut(s)	331, 732
HpyCH4V	TGCA	6 cut(s)	280, 625, 766, 850, 855, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 755, 852, 1147
HpyF3I	CTNAG	6 cut(s)	689, 794, 878, 889, 937, 1172
Hsp92II	CATG	5 cut(s)	236, 280, 754, 850, 1051
HspAI	GCGC	1 cut(s)	844
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	2 cut(s)	256, 273
Kzo9I	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
LguI	GCTCTTC	1 cut(s)	1002
LmnI	GCTCC	1 cut(s)	706
LweI	GCATC	2 cut(s)	312, 864
MaeI	CTAG	4 cut(s)	21, 219, 639, 648
MaeIII	GTNAC	5 cut(s)	363, 406, 448, 917, 929
MalI	GATC	7 cut(s)	204, 258, 275, 770, 778, 894, 950
MboI	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
MboII	GAAGA	7 cut(s)	181, 184, 308, 685, 692, 923, 1019
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	6 cut(s)	597, 801, 818, 827, 988, 1084
MmeI	TCCRAC	2 cut(s)	24, 574
Mph1103I	ATGCAT	1 cut(s)	852
MroI	TCCGGA	1 cut(s)	184
MslI	CAYNNNNRTG	3 cut(s)	72, 359, 906
MspI	CCGG	2 cut(s)	185, 499
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	113, 755, 852, 1147
NdeII	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
NlaIII	CATG	5 cut(s)	236, 280, 754, 850, 1051
NlaIV	GGNNCC	3 cut(s)	426, 497, 1080
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	3 cut(s)	363, 406, 917
NsiI	ATGCAT	1 cut(s)	852
NspI	RCATGY	1 cut(s)	850
NspV	TTCGAA	1 cut(s)	1028
OliI	CACNNNNGTG	1 cut(s)	906
PaeI	GCATGC	1 cut(s)	850
PciSI	GCTCTTC	1 cut(s)	1002
PfeI	GAWTC	6 cut(s)	213, 350, 628, 788, 1118, 1178
PflFI	GACNNNGTC	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	1048
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	426, 497, 1080
PspPI	GGNCC	1 cut(s)	1079
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	2 cut(s)	50, 887
RsaNI	GTAC	2 cut(s)	49, 886
RseI	CAYNNNNRTG	3 cut(s)	72, 359, 906
SapI	GCTCTTC	1 cut(s)	1002
Sau3AI	GATC	7 cut(s)	202, 256, 273, 768, 776, 892, 948
Sau96I	GGNCC	1 cut(s)	1079
ScaI	AGTACT	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	312, 864
SfuI	TTCGAA	1 cut(s)	1028
SinI	GGWCC	1 cut(s)	1079
SmiMI	CAYNNNNRTG	3 cut(s)	72, 359, 906
SmlI	CTYRAG	1 cut(s)	1018
SmoI	CTYRAG	1 cut(s)	1018
SphI	GCATGC	1 cut(s)	850
Sse9I	AATT	6 cut(s)	597, 801, 818, 827, 988, 1084
SspMI	CTAG	4 cut(s)	21, 219, 639, 648
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	331, 732
TaqI	TCGA	3 cut(s)	417, 993, 1028
TasI	AATT	6 cut(s)	597, 801, 818, 827, 988, 1084
TatI	WGTACW	2 cut(s)	48, 885
TfiI	GAWTC	6 cut(s)	213, 350, 628, 788, 1118, 1178
TscAI	CASTG	2 cut(s)	76, 862
TseFI	GTSAC	3 cut(s)	363, 406, 917
Tsp45I	GTSAC	3 cut(s)	363, 406, 917
TspDTI	ATGAA	3 cut(s)	221, 525, 840
TspRI	CASTG	2 cut(s)	76, 862
Tth111I	GACNNNGTC	1 cut(s)	665
Van91I	CCANNNNNTGG	1 cut(s)	1048
VpaK11BI	GGWCC	1 cut(s)	1079
XapI	RAATTY	5 cut(s)	597, 801, 818, 827, 988
XceI	RCATGY	1 cut(s)	850
XspI	CTAG	4 cut(s)	21, 219, 639, 648
ZrmI	AGTACT	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.