Rh1CG291400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0021793
Physical Location & Seq
Reverse (-)
56458906 .. 56459229
324 bp
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UTR
Exon/CDS
Intron
Rh1CG291400.1

Sequence Viewer

Length: 324 bp
ATGGATCCAAGGCTCGAAGGGAAGTATTCCCTTAAGGCTGCACAAAAGCTAGCAGCTGTGGCCAACCGGTGCTTGGTTAGACAGCCGAGATCACGTCCTAAAATGAGTGAAGTACTGGAGATGATAAATAGAATTGTGGAGACGACAGCAGATATGGGAAGCCCTCAAAAACTCCCTTCAGAGAGTTTAGAGCACTCCAAAGATGAATTTTTGACCGAATCCAAAAGGGAGATTTTGAGAAGGAAGTTTGTGGATCCACTTATTGGAGAGAATGGTTGCTTGAATTTGCAAATATGGAGACCCAAGATATTGAAGACATGTTGA

Protein Analysis

107

Amino Acids

12.28

Weight (kDa)

9.51

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021793)

Species Orthologous Gene IDs
rosa_samantha Rh1AG311100 Rh1AG311200 Rh1CG291400 Rh1CG291600 Rh1DG305000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AclWI GGATC 3 cut(s) 12, 248, 261
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 206, 283
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 73, 263
AflII CTTAAG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 317
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 283, 313
AjiI CACGTC 1 cut(s) 95
AluBI AGCT 2 cut(s) 49, 56
AluI AGCT 2 cut(s) 49, 56
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 134, 292
AlwI GGATC 3 cut(s) 12, 248, 261
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 38, 53
ApoI RAATTY 2 cut(s) 206, 283
AsiGI ACCGGT 1 cut(s) 66
AsuNHI GCTAGC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 2 cut(s) 4, 253
BbsI GAAGAC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 25, 65
BcoDI GTCTC 2 cut(s) 134, 292
BfaI CTAG 1 cut(s) 50
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 39, 54
BlsI GCNGC 2 cut(s) 40, 55
BmcAI AGTACT 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 6, 255
BmtI GCTAGC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 263
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 73, 263
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 25, 65
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 73, 263
BsmAI GTCTC 2 cut(s) 134, 292
BsmBI CGTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 3 cut(s) 4, 89, 253
BspANI GGCC 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 6, 255
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 3 cut(s) 12, 248, 261
BspTI CTTAAG 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 3 cut(s) 4, 89, 253
BssT1I CCWWGG 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 51
BstKTI GATC 3 cut(s) 7, 92, 256
BstMAI GTCTC 2 cut(s) 134, 292
BstMBI GATC 3 cut(s) 4, 89, 253
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 25, 65
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 2 cut(s) 4, 253
BstYI RGATCY 2 cut(s) 4, 253
BsuRI GGCC 1 cut(s) 62
BtrI CACGTC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 66
Csp6I GTAC 1 cut(s) 113
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 1 cut(s) 318
CviJI RGCY 7 cut(s) 13, 38, 49, 56, 62, 85, 162
CviKI_1 RGCY 7 cut(s) 13, 38, 49, 56, 62, 85, 162
CviQI GTAC 1 cut(s) 113
DpnI GATC 3 cut(s) 6, 91, 255
DpnII GATC 3 cut(s) 4, 89, 253
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 1 cut(s) 321
FaiI YATR 3 cut(s) 155, 295, 319
FatI CATG 1 cut(s) 317
Fnu4HI GCNGC 2 cut(s) 39, 54
Fsp4HI GCNGC 2 cut(s) 39, 54
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 39, 54
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 67
Hin1II CATG 1 cut(s) 321
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 181
HpyAV CCTTC 3 cut(s) 11, 186, 234
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 41, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 1 cut(s) 321
Kzo9I GATC 3 cut(s) 4, 89, 253
LpnPI CCDG 2 cut(s) 80, 101
Lsp1109I GCAGC 2 cut(s) 25, 65
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 94
MalI GATC 3 cut(s) 6, 91, 255
MboI GATC 3 cut(s) 4, 89, 253
MflI RGATCY 2 cut(s) 4, 253
MhlI GDGCHC 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 3 cut(s) 132, 206, 283
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 3 cut(s) 4, 89, 253
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 1 cut(s) 321
NlaIV GGNNCC 2 cut(s) 6, 255
NmeAIII GCCGAG 1 cut(s) 111
NspI RCATGY 1 cut(s) 321
PciI ACATGT 1 cut(s) 317
PfeI GAWTC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 2 cut(s) 40, 55
PscI ACATGT 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 6, 255
PsuI RGATCY 2 cut(s) 4, 253
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 39, 54
Sau3AI GATC 3 cut(s) 4, 89, 253
ScaI AGTACT 1 cut(s) 114
SduI GDGCHC 1 cut(s) 195
SetI ASST 3 cut(s) 51, 58, 97
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 132, 206, 283
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 15
TaqII GACCGA 1 cut(s) 230
TasI AATT 3 cut(s) 132, 206, 283
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 2 cut(s) 38, 53
TspDTI ATGAA 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 263
Vha464I CTTAAG 1 cut(s) 32
XapI RAATTY 2 cut(s) 206, 283
XceI RCATGY 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 1 cut(s) 50
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.