Rh1DG305000

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0021793
Physical Location & Seq
Reverse (-)
53243562 .. 53246140
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG305000.1

Sequence Viewer

Length: 1092 bp
ATGAAGTGTTTTTATTTCTACAACAAAGAGAAGAATGATGAACCAAAGACTACCAAGTCTCCTTCTGGTCATTCCACTTCCTCTTTCTTTTCACTTGATCGCGATCCAAGAAGATCAGAGTTTAATTCTCAGGATGTCTCGGAATTTAGCACAACATCCTCTGTCAAATCATTTGCAGCAATGTCTCAAAGACAGAGCAACCTAAGAGAATTCACATGTGCGGAGCTGAAAGCAGCAACAAAGAATTTTAGTCTCTCCCTCATGCTTGGAGAGGGTGGGTTTGGTGGTGTGTATAGGGGTATCATCAGGAGTGCACAAGATCCACATAAGAAGATAGATGTCGCTGTTAAACAACTGAGTAAAAGGGGATTGCAGGCAAGTGTTCTTCTTCTATGTTTGAAAATGATGTTATTCAAACAAGTTTTCTGCATTGTGATTATCTTCAGGGATTTCAAGTCTTCAAACATACTTTTGGATGAACATTGGAATGCAAAGTTATCTGACTTTGGATTAGCGCGGCTGGGGCCTTCAGACGGAGTGAGCCATGTCTCTACTGCCGTTGTTGGAACAGTTGGATATGCAGCTCCTGAATACATCCAAACAGGACATCTCACGTCGAAAAGTGATGTGTGGAGTTACGGCATTTTCCTTTTTGAACTCATCACAGGAAGGCGGCCTGTGGACCGAAACCGCCCCAAGAATGAGCAAAAGCTCTTGGAATGGGTGAGAGCACATCTGTCTGCAGATTCAAAAAAGTTTCAGCTTATTATGGATCCAAGGCTCGAAGGGAAGTATTCCCTCAAGGCTGCACAAAAGCTAGCAGCTGTGGCCAACCGGTGCTTGGTTAGACAGCCGAGATCACGTCCTAAAATGAGTGAAGTACTGGAGATGATAAATAGAATTGTGGAGACGACAACAGATATGGGAAGCCCTCAAAAACTCCCTTCAGAGAGTTTAGAGCACTCCAAAGATGAATTTTTGACAGAATCCAAAAGGGAGATTTTGAGAAGGAAGTTTGTGGATCCACTTATTGGAGAGAATGGTTGCTTGAATTTGCAAATATGGAGACCCAAGATATTGAAGACATGTTGA

Protein Analysis

363

Amino Acids

41.1

Weight (kDa)

9.58

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 145 - 296 2.9e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 146 - 297 7.9e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021793)

Species Orthologous Gene IDs
rosa_samantha Rh1AG311100 Rh1AG311200 Rh1CG291400 Rh1CG291600 Rh1DG305000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 1031
AccII CGCG 2 cut(s) 102, 517
AciI CCGC 4 cut(s) 221, 517, 673, 691
AclWI GGATC 6 cut(s) 98, 314, 767, 780, 1016, 1029
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 5 cut(s) 143, 209, 244, 974, 1051
AcuI CTGAAG 3 cut(s) 427, 513, 930
AfaI GTAC 1 cut(s) 882
AfiI CCNNNNNNNGG 3 cut(s) 533, 841, 1031
AflIII ACRYGT 2 cut(s) 215, 1085
AgeI ACCGGT 1 cut(s) 834
AgsI TTSAA 8 cut(s) 400, 415, 454, 462, 656, 750, 1051, 1081
AjiI CACGTC 2 cut(s) 615, 863
AluBI AGCT 6 cut(s) 226, 584, 712, 763, 817, 824
AluI AGCT 6 cut(s) 226, 584, 712, 763, 817, 824
Alw21I GWGCWC 3 cut(s) 316, 733, 963
Alw26I GTCTC 7 cut(s) 63, 142, 189, 257, 553, 902, 1060
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 6 cut(s) 98, 314, 767, 780, 1016, 1029
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 3 cut(s) 524, 674, 828
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 5 cut(s) 176, 233, 581, 806, 821
ApoI RAATTY 5 cut(s) 143, 209, 244, 974, 1051
AsiGI ACCGGT 1 cut(s) 834
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 2 cut(s) 524, 682
AsuHPI GGTGA 1 cut(s) 736
AsuNHI GCTAGC 1 cut(s) 817
AvaII GGWCC 1 cut(s) 682
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 1 cut(s) 830
BamHI GGATCC 2 cut(s) 772, 1021
BbsI GAAGAC 2 cut(s) 450, 1088
Bbv12I GWGCWC 3 cut(s) 316, 733, 963
BbvI GCAGC 5 cut(s) 188, 245, 593, 793, 833
BceAI ACGGC 2 cut(s) 542, 655
BcoDI GTCTC 7 cut(s) 63, 142, 189, 257, 553, 902, 1060
BfaI CTAG 1 cut(s) 818
BfmI CTRYAG 1 cut(s) 741
BisI GCNGC 7 cut(s) 177, 234, 518, 582, 674, 807, 822
BlsI GCNGC 7 cut(s) 178, 235, 519, 583, 675, 808, 823
BmcAI AGTACT 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 682
BmgBI CACGTC 2 cut(s) 615, 863
BmgT120I GGNCC 2 cut(s) 524, 682
BmiI GGNNCC 3 cut(s) 525, 774, 1023
BmtI GCTAGC 1 cut(s) 821
BpiI GAAGAC 2 cut(s) 450, 1088
BpmI CTGGAG 1 cut(s) 905
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 1060
BsaJI CCNNGG 1 cut(s) 776
BsaWI WCCGGW 1 cut(s) 834
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 533, 841, 1031
Bse118I RCCGGY 1 cut(s) 834
Bse1I ACTGG 1 cut(s) 888
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 776
BseGI GGATG 4 cut(s) 139, 155, 481, 594
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 533, 841, 1031
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 143, 347
BseNI ACTGG 1 cut(s) 888
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 5 cut(s) 188, 245, 593, 793, 833
BseYI CCCAGC 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 2 cut(s) 102, 517
BshFI GGCC 3 cut(s) 526, 676, 830
BshTI ACCGGT 1 cut(s) 834
BsiHKAI GWGCWC 3 cut(s) 316, 733, 963
BsiSI CCGG 1 cut(s) 835
BslI CCNNNNNNNGG 3 cut(s) 533, 841, 1031
BsmAI GTCTC 7 cut(s) 63, 142, 189, 257, 553, 902, 1060
BsmBI CGTCTC 1 cut(s) 902
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 3 cut(s) 526, 676, 830
Bso31I GGTCTC 1 cut(s) 1060
Bsp1286I GDGCHC 3 cut(s) 316, 733, 963
Bsp143I GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 4 cut(s) 221, 517, 673, 691
BspANI GGCC 3 cut(s) 526, 676, 830
BspCNI CTCAG 2 cut(s) 142, 348
BspFNI CGCG 2 cut(s) 102, 517
BspLI GGNNCC 3 cut(s) 525, 774, 1023
BspMAI CTGCAG 1 cut(s) 745
BspOI GCTAGC 1 cut(s) 821
BspPI GGATC 6 cut(s) 98, 314, 767, 780, 1016, 1029
BspTNI GGTCTC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 834
BsrI ACTGG 1 cut(s) 888
BssAI RCCGGY 1 cut(s) 834
BssECI CCNNGG 1 cut(s) 776
BssMI GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
BssT1I CCWWGG 1 cut(s) 776
Bst4CI ACNGT 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 375, 819
BstDEI CTNAG 3 cut(s) 129, 203, 356
BstF5I GGATG 4 cut(s) 139, 155, 481, 594
BstFNI CGCG 2 cut(s) 102, 517
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 7 cut(s) 100, 106, 116, 322, 775, 860, 1024
BstMAI GTCTC 7 cut(s) 63, 142, 189, 257, 553, 902, 1060
BstMBI GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 523, 827
BstNSI RCATGY 2 cut(s) 219, 1089
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 316
BstUI CGCG 2 cut(s) 102, 517
BstV1I GCAGC 5 cut(s) 188, 245, 593, 793, 833
BstV2I GAAGAC 2 cut(s) 450, 1088
BstX2I RGATCY 3 cut(s) 319, 772, 1021
BstYI RGATCY 3 cut(s) 319, 772, 1021
BsuRI GGCC 3 cut(s) 526, 676, 830
BtrI CACGTC 2 cut(s) 615, 863
BtsCI GGATG 4 cut(s) 139, 155, 481, 594
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 375, 819
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 834
Cfr13I GGNCC 2 cut(s) 524, 682
Csp6I GTAC 1 cut(s) 881
CspAI ACCGGT 1 cut(s) 834
CviAII CATG 4 cut(s) 216, 262, 545, 1086
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 3 cut(s) 129, 203, 356
DpnI GATC 7 cut(s) 99, 105, 115, 321, 774, 859, 1023
DpnII GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 776
Eco31I GGTCTC 1 cut(s) 1060
Eco47I GGWCC 1 cut(s) 682
Eco57I CTGAAG 3 cut(s) 427, 513, 930
EcoO109I RGGNCCY 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 776
Esp3I CGTCTC 1 cut(s) 902
FaeI CATG 4 cut(s) 219, 265, 548, 1089
FatI CATG 4 cut(s) 215, 261, 544, 1085
Fnu4HI GCNGC 7 cut(s) 177, 234, 518, 582, 674, 807, 822
FokI GGATG 4 cut(s) 142, 146, 488, 581
Fsp4HI GCNGC 7 cut(s) 177, 234, 518, 582, 674, 807, 822
FspBI CTAG 1 cut(s) 818
GlaI GCGC 1 cut(s) 516
GluI GCNGC 7 cut(s) 177, 234, 518, 582, 674, 807, 822
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 3 cut(s) 526, 676, 830
HapII CCGG 1 cut(s) 835
HhaI GCGC 1 cut(s) 517
Hin1II CATG 4 cut(s) 219, 265, 548, 1089
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HinfI GANTC 2 cut(s) 746, 986
HpaII CCGG 1 cut(s) 835
HphI GGTGA 1 cut(s) 736
Hpy166II GTNNAC 2 cut(s) 314, 682
Hpy188I TCNGA 5 cut(s) 118, 142, 502, 532, 949
Hpy188III TCNNGA 4 cut(s) 101, 131, 307, 587
Hpy8I GTNNAC 2 cut(s) 314, 682
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 6 cut(s) 72, 537, 663, 779, 954, 1002
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 2 cut(s) 614, 862
HpyCH4V TGCA 9 cut(s) 176, 314, 373, 429, 491, 581, 743, 809, 1057
HpyF10VI GCNNNNNNNGC 2 cut(s) 523, 827
HpyF3I CTNAG 3 cut(s) 129, 203, 356
HpySE526I ACGT 2 cut(s) 614, 862
Hsp92II CATG 4 cut(s) 219, 265, 548, 1089
HspAI GCGC 1 cut(s) 515
Kzo9I GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
LmnI GCTCC 2 cut(s) 223, 589
Lsp1109I GCAGC 5 cut(s) 188, 245, 593, 793, 833
MaeI CTAG 1 cut(s) 818
MaeII ACGT 2 cut(s) 614, 862
MaeIII GTNAC 1 cut(s) 635
MalI GATC 7 cut(s) 99, 105, 115, 321, 774, 859, 1023
MboI GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
MboII GAAGA 7 cut(s) 43, 123, 343, 377, 380, 433, 450
MflI RGATCY 3 cut(s) 319, 772, 1021
MhlI GDGCHC 3 cut(s) 316, 733, 963
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 7 cut(s) 124, 143, 209, 244, 900, 974, 1051
MluNI TGGCCA 1 cut(s) 830
MmeI TCCRAC 2 cut(s) 544, 553
MnlI CCTC 6 cut(s) 91, 169, 265, 269, 809, 942
Mox20I TGGCCA 1 cut(s) 830
MscI TGGCCA 1 cut(s) 830
MseI TTAA 2 cut(s) 123, 348
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 493
MvnI CGCG 2 cut(s) 102, 517
MwoI GCNNNNNNNGC 2 cut(s) 523, 827
NdeII GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 4 cut(s) 219, 265, 548, 1089
NlaIV GGNNCC 3 cut(s) 525, 774, 1023
NmeAIII GCCGAG 1 cut(s) 879
NruI TCGCGA 1 cut(s) 102
NspI RCATGY 2 cut(s) 219, 1089
PciI ACATGT 2 cut(s) 215, 1085
PctI GAATGC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 746, 986
PflMI CCANNNNNTGG 1 cut(s) 1031
PinAI ACCGGT 1 cut(s) 834
PkrI GCNGC 7 cut(s) 178, 235, 519, 583, 675, 808, 823
PscI ACATGT 2 cut(s) 215, 1085
PspFI CCCAGC 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 525, 774, 1023
PspPI GGNCC 2 cut(s) 524, 682
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 3 cut(s) 319, 772, 1021
PvuII CAGCTG 1 cut(s) 824
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 2 cut(s) 123, 348
SatI GCNGC 7 cut(s) 177, 234, 518, 582, 674, 807, 822
Sau3AI GATC 7 cut(s) 97, 103, 113, 319, 772, 857, 1021
Sau96I GGNCC 2 cut(s) 524, 682
ScaI AGTACT 1 cut(s) 882
SduI GDGCHC 3 cut(s) 316, 733, 963
SetI ASST 9 cut(s) 204, 228, 586, 617, 714, 765, 819, 826, 865
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 7 cut(s) 124, 143, 209, 244, 900, 974, 1051
SsiI CCGC 4 cut(s) 221, 517, 673, 691
SspMI CTAG 1 cut(s) 818
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 2 cut(s) 617, 865
TaqI TCGA 2 cut(s) 617, 783
TaqII GACCGA 1 cut(s) 699
TasI AATT 7 cut(s) 124, 143, 209, 244, 900, 974, 1051
TatI WGTACW 1 cut(s) 880
TauI GCSGC 2 cut(s) 520, 676
TfiI GAWTC 2 cut(s) 746, 986
Tru1I TTAA 2 cut(s) 123, 348
Tru9I TTAA 2 cut(s) 123, 348
TseI GCWGC 5 cut(s) 176, 233, 581, 806, 821
TspDTI ATGAA 4 cut(s) 17, 54, 492, 987
TspGWI ACGGA 1 cut(s) 549
Van91I CCANNNNNTGG 1 cut(s) 1031
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 682
XapI RAATTY 5 cut(s) 143, 209, 244, 974, 1051
XceI RCATGY 2 cut(s) 219, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XspI CTAG 1 cut(s) 818
ZrmI AGTACT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.