Rh1CG369200

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0022439
Physical Location & Seq
Reverse (-)
63974226 .. 63975192
967 bp
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UTR
Exon/CDS
Intron
Rh1CG369200.1

Sequence Viewer

Length: 300 bp
ATGAGGAGCAACCAAGTTCGCTTGAATTGTGGTGTAACAATGCCTCTCATTGGGTTAGGCACTTACTCCTTCGAAAATGATAGGAACACTACTGAACTAGCAGTTCATATGGCCCTCAAGATGGGCTACAGGCACTTTGACACAGCCAGGATATATGGTTCTGAGGCTGCCCTGGGAAACGCTTTAACAGAGGCAATTCAGGATGGGACTGTAGAAAGAGAAAACATTTTTGTTACCTCTAAGTTATGGGGTAGTCATCACCATGACCCTGTTTCAGCTCTGAGACAAACTCTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

6.96

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 17 - 87 4.1e-14 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022439)

Species Orthologous Gene IDs
prunus_persica Prupe.2G276300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374851
rosa_samantha Rh1CG369200 Rh1CG374200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 50, 121
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 146, 171
AloI GAACNNNNNNTCC 2 cut(s) 142, 174
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 277
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 72
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 115, 197
BciT130I CCWGG 2 cut(s) 148, 173
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 2 cut(s) 127, 210
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 148, 173
BmgT120I GGNCC 1 cut(s) 112
BmrFI CCNGG 2 cut(s) 148, 173
BplI GAGNNNNNCTC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 171, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 121
BseBI CCWGG 2 cut(s) 148, 173
BseDI CCNNGG 2 cut(s) 171, 172
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 50, 121
BseMII CTCAG 2 cut(s) 153, 272
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 50, 121
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 72
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 154, 273
BspT104I TTCGAA 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 171, 172
Bst2UI CCWGG 2 cut(s) 148, 173
Bst4CI ACNGT 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 72
BstDEI CTNAG 3 cut(s) 162, 240, 281
BstF5I GGATG 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 277
BstNI CCWGG 2 cut(s) 148, 173
BstSCI CCNGG 2 cut(s) 146, 171
BstSFI CTRYAG 2 cut(s) 127, 210
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 1 cut(s) 263
CviJI RGCY 5 cut(s) 113, 126, 146, 167, 278
CviKI_1 RGCY 5 cut(s) 113, 126, 146, 167, 278
DdeI CTNAG 3 cut(s) 162, 240, 281
EcoRII CCWGG 2 cut(s) 146, 171
FaeI CATG 1 cut(s) 266
FaiI YATR 6 cut(s) 108, 110, 154, 156, 247, 264
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 262
FauNDI CATATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 98
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 113
Hin1II CATG 1 cut(s) 266
HphI GGTGA 1 cut(s) 251
Hpy188I TCNGA 2 cut(s) 163, 282
Hpy188III TCNNGA 2 cut(s) 118, 200
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 211
HpyF3I CTNAG 3 cut(s) 162, 240, 281
Hsp92II CATG 1 cut(s) 266
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 7 cut(s) 115, 133, 158, 160, 185, 185, 282
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 34, 232
MluCI AATT 2 cut(s) 25, 195
MnlI CCTC 5 cut(s) 54, 125, 157, 184, 247
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 148, 173
MvaI CCWGG 2 cut(s) 148, 173
NdeI CATATG 1 cut(s) 108
NlaIII CATG 1 cut(s) 266
NspV TTCGAA 1 cut(s) 72
PasI CCCWGGG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 146, 171
PspGI CCWGG 2 cut(s) 146, 171
PspPI GGNCC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 148, 173
SetI ASST 2 cut(s) 239, 280
SfcI CTRYAG 2 cut(s) 127, 210
SfuI TTCGAA 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 25, 195
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 146, 171
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 25, 195
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 95
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.