DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0318561 |
| rosa_samantha | Rh1AG035000 Rh1CG328800 Rh1DG036300 Rh2CG296100 Rh2CG301100 Rh2DG333200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 206 |
| AcoI | YGGCCR | 1 cut(s) | 88 |
| AcsI | RAATTY | 2 cut(s) | 141, 219 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 97 |
| AgsI | TTSAA | 1 cut(s) | 79 |
| AluBI | AGCT | 1 cut(s) | 244 |
| AluI | AGCT | 1 cut(s) | 244 |
| AlwI | GGATC | 1 cut(s) | 206 |
| AoxI | GGCC | 1 cut(s) | 88 |
| ApeKI | GCWGC | 1 cut(s) | 189 |
| ApoI | RAATTY | 2 cut(s) | 141, 219 |
| AsuC2I | CCSGG | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 1 cut(s) | 238 |
| BalI | TGGCCA | 1 cut(s) | 90 |
| BbvI | GCAGC | 1 cut(s) | 176 |
| BcnI | CCSGG | 1 cut(s) | 98 |
| BisI | GCNGC | 1 cut(s) | 190 |
| BlsI | GCNGC | 1 cut(s) | 191 |
| Bme1390I | CCNGG | 1 cut(s) | 98 |
| BmrFI | CCNGG | 1 cut(s) | 98 |
| BpuMI | CCSGG | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseXI | GCAGC | 1 cut(s) | 176 |
| BseYI | CCCAGC | 1 cut(s) | 192 |
| BshFI | GGCC | 1 cut(s) | 90 |
| BsiSI | CCGG | 1 cut(s) | 98 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BsnI | GGCC | 1 cut(s) | 90 |
| Bsp143I | GATC | 1 cut(s) | 211 |
| BspANI | GGCC | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 206 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 1 cut(s) | 211 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| BstDEI | CTNAG | 1 cut(s) | 245 |
| BstKTI | GATC | 1 cut(s) | 214 |
| BstMBI | GATC | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 198 |
| BstSCI | CCNGG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 1 cut(s) | 176 |
| BsuRI | GGCC | 1 cut(s) | 90 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| CviJI | RGCY | 4 cut(s) | 90, 167, 189, 244 |
| CviKI_1 | RGCY | 4 cut(s) | 90, 167, 189, 244 |
| DdeI | CTNAG | 1 cut(s) | 245 |
| DpnI | GATC | 1 cut(s) | 213 |
| DpnII | GATC | 1 cut(s) | 211 |
| EaeI | YGGCCR | 1 cut(s) | 88 |
| FaiI | YATR | 1 cut(s) | 203 |
| Fnu4HI | GCNGC | 1 cut(s) | 190 |
| Fsp4HI | GCNGC | 1 cut(s) | 190 |
| GluI | GCNGC | 1 cut(s) | 190 |
| GsaI | CCCAGC | 1 cut(s) | 196 |
| HaeIII | GGCC | 1 cut(s) | 90 |
| HapII | CCGG | 1 cut(s) | 98 |
| HpaII | CCGG | 1 cut(s) | 98 |
| HphI | GGTGA | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 1 cut(s) | 64 |
| Hpy188III | TCNNGA | 1 cut(s) | 215 |
| Hpy8I | GTNNAC | 1 cut(s) | 64 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4IV | ACGT | 1 cut(s) | 66 |
| HpyCH4V | TGCA | 1 cut(s) | 107 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 198 |
| HpyF3I | CTNAG | 1 cut(s) | 245 |
| HpySE526I | ACGT | 1 cut(s) | 66 |
| Kzo9I | GATC | 1 cut(s) | 211 |
| LpnPI | CCDG | 5 cut(s) | 12, 111, 162, 178, 228 |
| Lsp1109I | GCAGC | 1 cut(s) | 176 |
| MaeII | ACGT | 1 cut(s) | 66 |
| MalI | GATC | 1 cut(s) | 213 |
| MboI | GATC | 1 cut(s) | 211 |
| MlsI | TGGCCA | 1 cut(s) | 90 |
| MluCI | AATT | 6 cut(s) | 32, 46, 84, 110, 141, 219 |
| MluNI | TGGCCA | 1 cut(s) | 90 |
| MnlI | CCTC | 2 cut(s) | 130, 231 |
| Mox20I | TGGCCA | 1 cut(s) | 90 |
| MscI | TGGCCA | 1 cut(s) | 90 |
| MseI | TTAA | 2 cut(s) | 20, 183 |
| Msp20I | TGGCCA | 1 cut(s) | 90 |
| MspI | CCGG | 1 cut(s) | 98 |
| MspR9I | CCNGG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 198 |
| NciI | CCSGG | 1 cut(s) | 98 |
| NdeII | GATC | 1 cut(s) | 211 |
| PkrI | GCNGC | 1 cut(s) | 191 |
| PspFI | CCCAGC | 1 cut(s) | 192 |
| SaqAI | TTAA | 2 cut(s) | 20, 183 |
| SatI | GCNGC | 1 cut(s) | 190 |
| Sau3AI | GATC | 1 cut(s) | 211 |
| ScrFI | CCNGG | 1 cut(s) | 98 |
| SetI | ASST | 3 cut(s) | 31, 69, 246 |
| SgeI | CNNG | 7 cut(s) | 39, 109, 110, 161, 176, 205, 227 |
| Sse9I | AATT | 6 cut(s) | 32, 46, 84, 110, 141, 219 |
| StyD4I | CCNGG | 1 cut(s) | 96 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TaiI | ACGT | 1 cut(s) | 69 |
| TasI | AATT | 6 cut(s) | 32, 46, 84, 110, 141, 219 |
| Tru1I | TTAA | 2 cut(s) | 20, 183 |
| Tru9I | TTAA | 2 cut(s) | 20, 183 |
| TscAI | CASTG | 1 cut(s) | 123 |
| TseI | GCWGC | 1 cut(s) | 189 |
| TspRI | CASTG | 1 cut(s) | 123 |
| XapI | RAATTY | 2 cut(s) | 141, 219 |