DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0318561 |
| rosa_samantha | Rh1AG035000 Rh1CG328800 Rh1DG036300 Rh2CG296100 Rh2CG301100 Rh2DG333200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 208 |
| AclWI | GGATC | 1 cut(s) | 164 |
| AcoI | YGGCCR | 1 cut(s) | 38 |
| AcuI | CTGAAG | 1 cut(s) | 297 |
| AluBI | AGCT | 1 cut(s) | 202 |
| AluI | AGCT | 1 cut(s) | 202 |
| Alw26I | GTCTC | 1 cut(s) | 281 |
| AlwI | GGATC | 1 cut(s) | 164 |
| AoxI | GGCC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 1 cut(s) | 144 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 196 |
| BbsI | GAAGAC | 1 cut(s) | 228 |
| BbvI | GCAGC | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 281 |
| BisI | GCNGC | 1 cut(s) | 145 |
| BlsI | GCNGC | 1 cut(s) | 146 |
| BpiI | GAAGAC | 1 cut(s) | 228 |
| Bpu10I | CCTNAGC | 1 cut(s) | 203 |
| BsaI | GGTCTC | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 1 cut(s) | 25 |
| BseDI | CCNNGG | 1 cut(s) | 25 |
| BseRI | GAGGAG | 1 cut(s) | 299 |
| BseXI | GCAGC | 1 cut(s) | 131 |
| BseYI | CCCAGC | 1 cut(s) | 147 |
| BshFI | GGCC | 1 cut(s) | 40 |
| BsmAI | GTCTC | 1 cut(s) | 281 |
| BsnI | GGCC | 1 cut(s) | 40 |
| Bso31I | GGTCTC | 1 cut(s) | 281 |
| Bsp143I | GATC | 2 cut(s) | 169, 238 |
| Bsp19I | CCATGG | 1 cut(s) | 25 |
| BspACI | CCGC | 1 cut(s) | 208 |
| BspANI | GGCC | 1 cut(s) | 40 |
| BspPI | GGATC | 1 cut(s) | 164 |
| BspTNI | GGTCTC | 1 cut(s) | 281 |
| BssECI | CCNNGG | 1 cut(s) | 25 |
| BssMI | GATC | 2 cut(s) | 169, 238 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 227 |
| Bst6I | CTCTTC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 1 cut(s) | 203 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstKTI | GATC | 2 cut(s) | 172, 241 |
| BstMAI | GTCTC | 1 cut(s) | 281 |
| BstMBI | GATC | 2 cut(s) | 169, 238 |
| BstV1I | GCAGC | 1 cut(s) | 131 |
| BstV2I | GAAGAC | 1 cut(s) | 228 |
| BsuRI | GGCC | 1 cut(s) | 40 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| CviAII | CATG | 3 cut(s) | 26, 218, 236 |
| CviJI | RGCY | 5 cut(s) | 30, 40, 122, 144, 202 |
| CviKI_1 | RGCY | 5 cut(s) | 30, 40, 122, 144, 202 |
| DdeI | CTNAG | 1 cut(s) | 203 |
| DpnI | GATC | 2 cut(s) | 171, 240 |
| DpnII | GATC | 2 cut(s) | 169, 238 |
| EaeI | YGGCCR | 1 cut(s) | 38 |
| Eam1104I | CTCTTC | 1 cut(s) | 276 |
| EarI | CTCTTC | 1 cut(s) | 276 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco31I | GGTCTC | 1 cut(s) | 281 |
| Eco57I | CTGAAG | 1 cut(s) | 297 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 3 cut(s) | 29, 221, 239 |
| FatI | CATG | 3 cut(s) | 25, 217, 235 |
| FauI | CCCGC | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 1 cut(s) | 145 |
| Fsp4HI | GCNGC | 1 cut(s) | 145 |
| GluI | GCNGC | 1 cut(s) | 145 |
| GsaI | CCCAGC | 1 cut(s) | 151 |
| HaeIII | GGCC | 1 cut(s) | 40 |
| Hin1II | CATG | 3 cut(s) | 29, 221, 239 |
| HphI | GGTGA | 2 cut(s) | 88, 196 |
| Hpy188I | TCNGA | 1 cut(s) | 93 |
| Hpy188III | TCNNGA | 2 cut(s) | 167, 173 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 227 |
| HpyCH4IV | ACGT | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 203 |
| HpySE526I | ACGT | 1 cut(s) | 16 |
| Hsp92II | CATG | 3 cut(s) | 29, 221, 239 |
| Kzo9I | GATC | 2 cut(s) | 169, 238 |
| LpnPI | CCDG | 3 cut(s) | 39, 133, 186 |
| Lsp1109I | GCAGC | 1 cut(s) | 131 |
| MaeII | ACGT | 1 cut(s) | 16 |
| MalI | GATC | 2 cut(s) | 171, 240 |
| MboI | GATC | 2 cut(s) | 169, 238 |
| MboII | GAAGA | 3 cut(s) | 233, 290, 293 |
| MluCI | AATT | 2 cut(s) | 60, 153 |
| MnlI | CCTC | 1 cut(s) | 277 |
| MseI | TTAA | 3 cut(s) | 59, 138, 194 |
| NcoI | CCATGG | 1 cut(s) | 25 |
| NdeII | GATC | 2 cut(s) | 169, 238 |
| NlaIII | CATG | 3 cut(s) | 29, 221, 239 |
| PkrI | GCNGC | 1 cut(s) | 146 |
| PspFI | CCCAGC | 1 cut(s) | 147 |
| SaqAI | TTAA | 3 cut(s) | 59, 138, 194 |
| SatI | GCNGC | 1 cut(s) | 145 |
| Sau3AI | GATC | 2 cut(s) | 169, 238 |
| SetI | ASST | 3 cut(s) | 14, 19, 204 |
| Sse9I | AATT | 2 cut(s) | 60, 153 |
| SsiI | CCGC | 1 cut(s) | 208 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaaI | ACNGT | 2 cut(s) | 109, 227 |
| TaiI | ACGT | 1 cut(s) | 19 |
| TasI | AATT | 2 cut(s) | 60, 153 |
| Tru1I | TTAA | 3 cut(s) | 59, 138, 194 |
| Tru9I | TTAA | 3 cut(s) | 59, 138, 194 |
| TseI | GCWGC | 1 cut(s) | 144 |
| TspDTI | ATGAA | 2 cut(s) | 53, 234 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 224 |