Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019856

Physical Location & Seq

Genomic Coordinates Forward (+)

34017386 .. 34075473

Gene Structure 58088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTCAGGAACTTCACTAGAACTTTGGGTGCTAGTTTGGGGCAGCTGCAGCTTCATCTTCATCTTTGGTTTTGCTGACATAGCAGAAGCTCAGGCCACCACATATCCTTCTGAAGCGCGAGCTCTGAGTTCAATCTTCCAGCAATGGCAGATTGAGGCCAAATGGAACACAACCAGAGATCCATGCAGTGGAGAGGCCATTGACGACTCCATCGAAATCAGCAACGAAGCATACAACCCTTTCGCCAAATGCAACTGTTCAAACTCCGCTTGCCACATTACCCAACTGAAAGTTTCTACATTGGAGGTTGTTGGCGTAATTCCGGAACAGCTATGGACTCTGAAGTTTCTCACTCATCTCGATTTGGGTCACAATCACTTGACAGGACCTCTCTCTGCATCAATTGGAAATCTGAGCAGCTTGCAATATTTGAGCTTAGGCCATAACATGTTATCAGGCCAGCTACCAAAGGAACTCGGAAATCTCTCTAATTTGACATTCTTGGCTATTGGGACTATGAACTTTTCCGGTGGTCTACCACATGAGCTAGGGAATTTATTAAATTTACAACAGATTTACTTGGATAGTTCTGGAGTTAGCGGTGAGATTCCACCGACGTTTGCTAATCTACGAAACTTGACCATATTCCGGGTGTCAGACACAGAACTCTCTGGCAGGATACCTGACTTCGTAGGATATTGGTCAAAGCTTACTTCCTTGGTATTTCAAGGGAACTCTTTTGAAGGTCCTATACCAGCTACACTGTCCAATCTGACTTCTCTTGTGGAGCTGAGAATTAGTGATATAATATCTACTGCCAGTGGGAACTCTTCTCTTGGATTTATTAAGGATATGAAGTCAAGATCTCTAAAAGTCCTAGTGCTGCGAAATAACAATATTTCTGATTCAATTCCTTCTAATATTGGAGAGTTGCAAAGTTTGTATCACCTATTAAAGGTAGAAACCTTACGTTTTTACCATGGCTTACTATGGCCGAATAGCATATCTGGTTTAATTCATAACTCTATGGTGATTACCATAAATCCGATTTTTTTCCCTACTGTTATTCCCCAAGCCACACAGATTTTTGTTAATGGCTGCTGGGTAATTGGCATACATCGTGATCCTGAAATGTTGGTGAGAACATTAAGGAAGCTAAGGCGGGATCTTGTACAAGCAAGGCTCAATCCTGAGGAGGCAAATTCTGACACTTATGCTCATTGCAAAATTCACTCGTCACTTATATTGAGTGTTTGTGCTTCAATTATACCATTTCCTGATCATAATCAGGATACACTGGCTTATGTTCTGTACTACCCTCAGAAGCTGCTTGTCACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

447

Amino Acids

49.41

Weight (kDa)

5.89

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	105 - 195	1.3e-08	Leucine-rich repeat region
LRR_14	PF23598	182 - 271	5.5e-07	Leucine-rich repeat region
RNA_pol_Rpb2_4	PF04566	362 - 389	5.8e-06	RNA polymerase Rpb2, domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019856)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318561
rosa_samantha	Rh1AG035000 Rh1CG328800 Rh1DG036300 Rh2CG296100 Rh2CG301100 Rh2DG333200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	535
AccII	CGCG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	3 cut(s)	267, 600, 1162
AclWI	GGATC	3 cut(s)	173, 1118, 1173
AcoI	YGGCCR	1 cut(s)	992
AcsI	RAATTY	4 cut(s)	553, 562, 1201, 1227
AcuI	CTGAAG	2 cut(s)	132, 362
AfaI	GTAC	2 cut(s)	1173, 1313
AfiI	CCNNNNNNNGG	3 cut(s)	188, 648, 955
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	6 cut(s)	132, 261, 728, 743, 909, 1263
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	3 cut(s)	173, 1118, 1173
AlwNI	CAGNNNCTG	1 cut(s)	1327
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	6 cut(s)	93, 156, 195, 439, 457, 992
ApeKI	GCWGC	7 cut(s)	42, 45, 48, 417, 883, 1098, 1327
ApoI	RAATTY	4 cut(s)	553, 562, 1201, 1227
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	2 cut(s)	386, 746
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	614, 938, 1042, 1150
AvaII	GGWCC	2 cut(s)	386, 746
AxyI	CCTNAGG	1 cut(s)	1191
BanII	GRGCYC	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	7 cut(s)	32, 54, 60, 429, 870, 1085, 1314
BccI	CCATC	1 cut(s)	218
BciVI	GTATCC	2 cut(s)	672, 1285
BclI	TGATCA	1 cut(s)	1279
BcnI	CCSGG	1 cut(s)	650
BfaI	CTAG	4 cut(s)	17, 32, 548, 878
BfmI	CTRYAG	1 cut(s)	46
BfuI	GTATCC	2 cut(s)	672, 1285
BglII	AGATCT	1 cut(s)	863
BisI	GCNGC	7 cut(s)	43, 46, 49, 418, 884, 1099, 1328
BlsI	GCNGC	7 cut(s)	44, 47, 50, 419, 885, 1100, 1329
Bme1390I	CCNGG	1 cut(s)	650
Bme18I	GGWCC	2 cut(s)	386, 746
BmgT120I	GGNCC	2 cut(s)	386, 746
BmrFI	CCNGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	3 cut(s)	90, 436, 1157
BpuMI	CCSGG	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	1284
BsaJI	CCNNGG	2 cut(s)	717, 979
BsaWI	WCCGGW	2 cut(s)	322, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 648, 955
Bse1I	ACTGG	2 cut(s)	819, 1302
Bse21I	CCTNAGG	1 cut(s)	1191
Bse3DI	GCAATG	2 cut(s)	149, 1219
Bse8I	GATNNNNATC	1 cut(s)	1284
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	717, 979
BseJI	GATNNNNATC	1 cut(s)	1284
BseLI	CCNNNNNNNGG	3 cut(s)	188, 648, 955
BseMI	GCAATG	2 cut(s)	149, 1219
BseMII	CTCAG	6 cut(s)	104, 116, 404, 782, 1182, 1334
BseNI	ACTGG	2 cut(s)	819, 1302
BseRI	GAGGAG	1 cut(s)	1208
BseXI	GCAGC	7 cut(s)	32, 54, 60, 429, 870, 1085, 1314
BseYI	CCCAGC	1 cut(s)	1101
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	6 cut(s)	95, 158, 197, 441, 459, 994
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	3 cut(s)	323, 528, 649
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	3 cut(s)	188, 648, 955
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	6 cut(s)	95, 158, 197, 441, 459, 994
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	1171
Bsp143I	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	3 cut(s)	267, 600, 1162
BspANI	GGCC	6 cut(s)	95, 158, 197, 441, 459, 994
BspCNI	CTCAG	6 cut(s)	103, 117, 405, 783, 1183, 1333
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	3 cut(s)	173, 1118, 1173
BsrDI	GCAATG	2 cut(s)	149, 1219
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	2 cut(s)	819, 1302
BssECI	CCNNGG	2 cut(s)	717, 979
BssMI	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
BssT1I	CCWWGG	2 cut(s)	717, 979
Bst4CI	ACNGT	3 cut(s)	257, 765, 1063
Bst6I	CTCTTC	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	1171
BstC8I	GCNNGC	4 cut(s)	120, 271, 422, 461
BstDEI	CTNAG	8 cut(s)	90, 125, 413, 436, 791, 1157, 1191, 1320
BstDSI	CCRYGG	1 cut(s)	979
BstENI	CCTNNNNNAGG	1 cut(s)	953
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	5 cut(s)	181, 866, 1126, 1168, 1282
BstMBI	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 80
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	648
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	7 cut(s)	32, 54, 60, 429, 870, 1085, 1314
BstX2I	RGATCY	3 cut(s)	178, 863, 1165
BstYI	RGATCY	3 cut(s)	178, 863, 1165
Bsu36I	CCTNAGG	1 cut(s)	1191
BsuI	GTATCC	2 cut(s)	672, 1285
BsuRI	GGCC	6 cut(s)	95, 158, 197, 441, 459, 994
BtgI	CCRYGG	1 cut(s)	979
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	4 cut(s)	193, 761, 826, 1295
Cac8I	GCNNGC	4 cut(s)	120, 271, 422, 461
CaiI	CAGNNNCTG	1 cut(s)	1327
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	386, 746
Csp6I	GTAC	2 cut(s)	1172, 1312
CviAII	CATG	5 cut(s)	183, 448, 542, 980, 1341
CviQI	GTAC	2 cut(s)	1172, 1312
DdeI	CTNAG	8 cut(s)	90, 125, 413, 436, 791, 1157, 1191, 1320
DpnI	GATC	5 cut(s)	180, 865, 1125, 1167, 1281
DpnII	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
EaeI	YGGCCR	1 cut(s)	992
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	717, 979
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	386, 746
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	132, 362
Eco81I	CCTNAGG	1 cut(s)	1191
EcoICRI	GAGCTC	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	953
EcoO109I	RGGNCCY	2 cut(s)	386, 746
EcoT14I	CCWWGG	2 cut(s)	717, 979
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	717, 979
FaeI	CATG	5 cut(s)	186, 451, 545, 983, 1344
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	5 cut(s)	182, 447, 541, 979, 1340
FauI	CCCGC	1 cut(s)	1155
FbaI	TGATCA	1 cut(s)	1279
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	7 cut(s)	43, 46, 49, 418, 884, 1099, 1328
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	7 cut(s)	43, 46, 49, 418, 884, 1099, 1328
FspBI	CTAG	4 cut(s)	17, 32, 548, 878
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	7 cut(s)	43, 46, 49, 418, 884, 1099, 1328
GsaI	CCCAGC	1 cut(s)	1105
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	6 cut(s)	95, 158, 197, 441, 459, 994
HapII	CCGG	3 cut(s)	323, 528, 649
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	5 cut(s)	186, 451, 545, 983, 1344
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	206, 337, 607, 905
HpaII	CCGG	3 cut(s)	323, 528, 649
HphI	GGTGA	4 cut(s)	614, 938, 1042, 1150
Hpy166II	GTNNAC	1 cut(s)	536
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	3 cut(s)	117, 737, 924
HpyCH4III	ACNGT	3 cut(s)	257, 765, 1063
HpyCH4IV	ACGT	2 cut(s)	617, 970
HpyCH4V	TGCA	7 cut(s)	48, 186, 252, 398, 424, 934, 1224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 80
HpyF3I	CTNAG	8 cut(s)	90, 125, 413, 436, 791, 1157, 1191, 1320
HpySE526I	ACGT	2 cut(s)	617, 970
Hsp92II	CATG	5 cut(s)	186, 451, 545, 983, 1344
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	7 cut(s)	32, 54, 60, 429, 870, 1085, 1314
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	4 cut(s)	17, 32, 548, 878
MaeII	ACGT	2 cut(s)	617, 970
MaeIII	GTNAC	3 cut(s)	368, 1236, 1333
MalI	GATC	5 cut(s)	180, 865, 1125, 1167, 1281
MboI	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
MboII	GAAGA	3 cut(s)	49, 127, 822
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	3 cut(s)	178, 863, 1165
MhlI	GDGCHC	1 cut(s)	124
MlyI	GAGTC	2 cut(s)	200, 331
MnlI	CCTC	7 cut(s)	148, 187, 298, 399, 1186, 1189, 1329
MroI	TCCGGA	1 cut(s)	322
MseI	TTAA	6 cut(s)	560, 846, 953, 1013, 1092, 1148
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	323, 528, 649
MspR9I	CCNGG	1 cut(s)	650
MunI	CAATTG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	48, 80
NciI	CCSGG	1 cut(s)	650
NcoI	CCATGG	1 cut(s)	979
NdeII	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
NlaIII	CATG	5 cut(s)	186, 451, 545, 983, 1344
NmuCI	GTSAC	3 cut(s)	368, 1236, 1333
NspI	RCATGY	1 cut(s)	451
PciI	ACATGT	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	607, 905
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	7 cut(s)	44, 47, 50, 419, 885, 1100, 1329
PleI	GAGTC	2 cut(s)	200, 331
PpsI	GAGTC	2 cut(s)	200, 331
PpuMI	RGGWCCY	2 cut(s)	386, 746
PscI	ACATGT	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	124
Psp5II	RGGWCCY	2 cut(s)	386, 746
PspFI	CCCAGC	1 cut(s)	1101
PspPI	GGNCC	2 cut(s)	386, 746
PspPPI	RGGWCCY	2 cut(s)	386, 746
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	1327
PsuI	RGATCY	3 cut(s)	178, 863, 1165
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	1173, 1313
RsaNI	GTAC	2 cut(s)	1172, 1312
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	6 cut(s)	560, 846, 953, 1013, 1092, 1148
SatI	GCNGC	7 cut(s)	43, 46, 49, 418, 884, 1099, 1328
Sau3AI	GATC	5 cut(s)	178, 863, 1123, 1165, 1279
Sau96I	GGNCC	2 cut(s)	386, 746
SchI	GAGTC	2 cut(s)	200, 331
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	386, 746
SsiI	CCGC	3 cut(s)	267, 600, 1162
SspI	AATATT	3 cut(s)	428, 898, 922
SspMI	CTAG	4 cut(s)	17, 32, 548, 878
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	648
StyI	CCWWGG	2 cut(s)	717, 979
TaaI	ACNGT	3 cut(s)	257, 765, 1063
TaiI	ACGT	2 cut(s)	620, 973
TaqI	TCGA	2 cut(s)	213, 360
TatI	WGTACW	2 cut(s)	1171, 1311
TfiI	GAWTC	2 cut(s)	607, 905
Tru1I	TTAA	6 cut(s)	560, 846, 953, 1013, 1092, 1148
Tru9I	TTAA	6 cut(s)	560, 846, 953, 1013, 1092, 1148
TscAI	CASTG	4 cut(s)	193, 768, 826, 1302
TseFI	GTSAC	3 cut(s)	368, 1236, 1333
TseI	GCWGC	7 cut(s)	42, 45, 48, 417, 883, 1098, 1327
Tsp45I	GTSAC	3 cut(s)	368, 1236, 1333
TspDTI	ATGAA	5 cut(s)	43, 49, 533, 869, 1007
TspRI	CASTG	4 cut(s)	193, 768, 826, 1302
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	386, 746
XagI	CCTNNNNNAGG	1 cut(s)	953
XapI	RAATTY	4 cut(s)	553, 562, 1201, 1227
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	4 cut(s)	17, 32, 548, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.