Rh1DG115900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0020463
Physical Location & Seq
Forward (+)
21195237 .. 21206695
11459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG115900.1

Sequence Viewer

Length: 405 bp
ATGAGTATTGATTTTGGTTTGTGTGGACTCCAAGTTGACCTGAATGTGTGGGTTTGTGTGGACTCCATATTGCAAATTGCAAATTTAAATACTCCCACACTTCAGTTTTCTTCTTCTAGGTATGATCTTTCAAACTCTCAACATGGCGACAAAATTAGAGCTCATTGGATGCAGAATGGTATCAGGATCAACTTCACATACCATGGCCAGGCTTTGCAATGGTCCACAAAGCCCAACATGAGATTTCAGCAACATTTGATGCTGAACCGGGTAAAAGATGGGCTGAAGCAAAAGAAAATCGAGCTTCATTATACAAAGGAAGCTGTGGAGCTTCTTGTTTTGGGGTCCAGGACAAGAGGCAACCATTTGACCAATGAAGGATTTGAACATGCAGGAGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.34

Weight (kDa)

9.03

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020463)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330831
rosa_samantha Rh1AG111700 Rh1CG106000 Rh1DG114900 Rh1DG115900 Rh6CG147000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 2 cut(s) 86, 305
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 2 cut(s) 132, 386
AjnI CCWGG 2 cut(s) 207, 347
AluBI AGCT 4 cut(s) 161, 304, 323, 331
AluI AGCT 4 cut(s) 161, 304, 323, 331
Alw21I GWGCWC 1 cut(s) 163
AlwI GGATC 1 cut(s) 194
AoxI GGCC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 222, 345
AsuC2I CCSGG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 222, 345
BalI TGGCCA 1 cut(s) 207
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 209, 349
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 1 cut(s) 117
Bme1390I CCNGG 3 cut(s) 209, 269, 349
Bme18I GGWCC 2 cut(s) 222, 345
BmgT120I GGNCC 2 cut(s) 222, 345
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 3 cut(s) 209, 269, 349
BmsI GCATC 2 cut(s) 159, 249
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 224
BseBI CCWGG 2 cut(s) 209, 349
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 224
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 208
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 124, 186
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 124, 186
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 209, 349
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 2 cut(s) 127, 189
BstMBI GATC 2 cut(s) 124, 186
BstNI CCWGG 2 cut(s) 209, 349
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 3 cut(s) 207, 267, 347
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 222, 345
CviAII CATG 4 cut(s) 143, 203, 238, 389
CviJI RGCY 8 cut(s) 161, 207, 212, 232, 283, 304, 323, 331
CviKI_1 RGCY 8 cut(s) 161, 207, 212, 232, 283, 304, 323, 331
DpnI GATC 2 cut(s) 126, 188
DpnII GATC 2 cut(s) 124, 186
DraI TTTAAA 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 222, 345
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 86, 305
EcoICRI GAGCTC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 207, 347
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 4 cut(s) 146, 206, 241, 392
FaiI YATR 8 cut(s) 68, 123, 144, 199, 204, 239, 312, 390
FatI CATG 4 cut(s) 142, 202, 237, 388
FokI GGATG 1 cut(s) 181
FriOI GRGCYC 1 cut(s) 163
FspBI CTAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 268
Hin1II CATG 4 cut(s) 146, 206, 241, 392
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 27, 62
HpaII CCGG 1 cut(s) 268
Hpy166II GTNNAC 4 cut(s) 26, 37, 61, 225
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 4 cut(s) 26, 37, 61, 225
HpyAV CCTTC 1 cut(s) 371
HpyCH4V TGCA 5 cut(s) 73, 80, 172, 217, 392
Hsp92II CATG 4 cut(s) 146, 206, 241, 392
Kzo9I GATC 2 cut(s) 124, 186
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 53, 169, 194, 221, 281, 334, 361, 378
LweI GCATC 2 cut(s) 159, 249
MaeI CTAG 1 cut(s) 117
MalI GATC 2 cut(s) 126, 188
MboI GATC 2 cut(s) 124, 186
MboII GAAGA 2 cut(s) 102, 105
MhlI GDGCHC 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 3 cut(s) 75, 82, 153
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 2 cut(s) 21, 56
MnlI CCTC 2 cut(s) 350, 389
Mox20I TGGCCA 1 cut(s) 207
MscI TGGCCA 1 cut(s) 207
MseI TTAA 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 207
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 3 cut(s) 209, 269, 349
MvaI CCWGG 2 cut(s) 209, 349
NciI CCSGG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 202
NdeII GATC 2 cut(s) 124, 186
NlaIII CATG 4 cut(s) 146, 206, 241, 392
NlaIV GGNNCC 1 cut(s) 346
NspI RCATGY 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 347
PleI GAGTC 2 cut(s) 21, 56
PpsI GAGTC 2 cut(s) 21, 56
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 207, 347
PspGI CCWGG 2 cut(s) 207, 347
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 222, 345
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 2 cut(s) 124, 186
Sau96I GGNCC 2 cut(s) 222, 345
SchI GAGTC 2 cut(s) 21, 56
ScrFI CCNGG 3 cut(s) 209, 269, 349
SduI GDGCHC 1 cut(s) 163
SetI ASST 7 cut(s) 42, 122, 163, 306, 325, 333, 400
SfaNI GCATC 2 cut(s) 159, 249
SinI GGWCC 2 cut(s) 222, 345
SmiI ATTTAAAT 1 cut(s) 87
Sse9I AATT 3 cut(s) 75, 82, 153
SspMI CTAG 1 cut(s) 117
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 3 cut(s) 207, 267, 347
StyI CCWWGG 1 cut(s) 202
SwaI ATTTAAAT 1 cut(s) 87
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 75, 82, 153
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 296, 390
VpaK11BI GGWCC 2 cut(s) 222, 345
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 392
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.