Rh2AG203800

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0023990
Physical Location & Seq
Forward (+)
20611976 .. 20613008
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG203800.1

Sequence Viewer

Length: 711 bp
ATGCTTCCAAAGGACTTGTTCTCCGATAAATTAGAAAGATTCTATATACGTATTGGCGATCACTATTCAGTCTATTCGGAAGGAAGGAGCATGAATACGTTGAAACTCCAGTTCACTACTGGCGACGAATTGGACCAAGGTCTAAAGATGTTGGTGAAGAGATCTGAAGATTTGACTTTGCTCGGGGGAGCGAATGTTAATGAAATTGCCTATCAATTAGAAGGCGACAATTTACGGCAAGTAAAGCATCTTCAACTCACGGAACTAGATATTACATTCATCATTAATTCAAAGGTTGTGTTTTCTAGTTTGACAACCTTGGAAGTGACTAACTGTCATGGTATAAAATTCTTATTCTCGTCTTCAATGGCCAGAAGTCTAGTTCAACTCAGAACTCTCACCATAAGTCGATGTAGAAGCATGATGGAAATAGTATCCACACAAGAAGACGACGAAGAAAACAATATAGTTAACATGTTCTCTAAACTAGAATCTCTTACACTAACAGAGCTTCCAAGCTTGGTTAGATTCTGCTCAGGAAGTTATGCTGAATTTTCAGCATTAGAGGAGGTACTCATATCTAATGGTCAGGGTAAAAGTACTACAATTATGAAAGAAATTGAAGATGGAGACTCGAAGGATCACCTAGGTGTTGACAATGCTGTACTTTACTTCTTTTTTATGAAAAGGTGCACAACTTATAACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

236

Amino Acids

26.78

Weight (kDa)

5.02

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 82 - 195 1.9e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023990)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18120
rosa_samantha Rh2AG203800 Rh2AG204100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 702
AclWI GGATC 1 cut(s) 648
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 2 cut(s) 347, 551
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 3 cut(s) 573, 601, 666
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 6 cut(s) 103, 254, 291, 366, 386, 623
AhdI GACNNNNNGTC 1 cut(s) 333
AleI CACNNNNGTG 1 cut(s) 648
AluBI AGCT 2 cut(s) 511, 519
AluI AGCT 2 cut(s) 511, 519
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 1 cut(s) 624
Alw44I GTGCAC 1 cut(s) 691
AlwI GGATC 1 cut(s) 648
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 1 cut(s) 369
ApaLI GTGCAC 1 cut(s) 691
ApoI RAATTY 2 cut(s) 347, 551
AseI ATTAAT 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 646
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 3 cut(s) 166, 391, 635
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 1 cut(s) 133
AvrII CCTAGG 1 cut(s) 646
BaeGI GKGCMC 1 cut(s) 695
BalI TGGCCA 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BbsI GAAGAC 2 cut(s) 354, 453
Bbv12I GWGCWC 1 cut(s) 695
BccI CCATC 2 cut(s) 418, 620
BceAI ACGGC 1 cut(s) 251
BciVI GTATCC 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 5 cut(s) 266, 306, 380, 488, 647
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 161
BlnI CCTAGG 1 cut(s) 646
BmcAI AGTACT 1 cut(s) 601
Bme18I GGWCC 1 cut(s) 133
BmeRI GACNNNNNGTC 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 2 cut(s) 354, 453
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 535
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 136, 318, 646
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 180, 210
Bse1I ACTGG 2 cut(s) 109, 124
BseDI CCNNGG 3 cut(s) 136, 318, 646
BseMII CTCAG 2 cut(s) 403, 549
BseNI ACTGG 2 cut(s) 109, 124
BseRI GAGGAG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 695
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 695
BsiHKCI CYCGRG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 624
BsnI GGCC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 3 cut(s) 58, 161, 640
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 402, 548
BspPI GGATC 1 cut(s) 648
BsrI ACTGG 2 cut(s) 109, 124
BssECI CCNNGG 3 cut(s) 136, 318, 646
BssMI GATC 3 cut(s) 58, 161, 640
BssT1I CCWWGG 3 cut(s) 136, 318, 646
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 389, 535
BstKTI GATC 3 cut(s) 61, 164, 643
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 3 cut(s) 58, 161, 640
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 478
BstPAI GACNNNNGTC 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 695
BstSNI TACGTA 1 cut(s) 50
BstV2I GAAGAC 2 cut(s) 354, 453
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 3 cut(s) 572, 600, 665
CviAII CATG 4 cut(s) 91, 338, 421, 475
CviJI RGCY 3 cut(s) 371, 511, 519
CviKI_1 RGCY 3 cut(s) 371, 511, 519
CviQI GTAC 3 cut(s) 572, 600, 665
DdeI CTNAG 2 cut(s) 389, 535
DpnI GATC 3 cut(s) 60, 163, 642
DpnII GATC 3 cut(s) 58, 161, 640
DriI GACNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 152
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 3 cut(s) 136, 318, 646
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 182
EcoT14I CCWWGG 3 cut(s) 136, 318, 646
ErhI CCWWGG 3 cut(s) 136, 318, 646
FaeI CATG 4 cut(s) 94, 341, 424, 478
FatI CATG 4 cut(s) 90, 337, 420, 474
FspBI CTAG 5 cut(s) 266, 306, 380, 488, 647
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 1 cut(s) 371
Hin1II CATG 4 cut(s) 94, 341, 424, 478
HincII GTYRAC 2 cut(s) 472, 655
HindII GTYRAC 2 cut(s) 472, 655
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 4 cut(s) 39, 491, 528, 632
HpaI GTTAAC 1 cut(s) 472
HphI GGTGA 3 cut(s) 166, 391, 635
Hpy166II GTNNAC 4 cut(s) 114, 472, 655, 693
Hpy188I TCNGA 4 cut(s) 25, 79, 166, 392
Hpy188III TCNNGA 1 cut(s) 537
Hpy8I GTNNAC 4 cut(s) 114, 472, 655, 693
Hpy99I CGWCG 2 cut(s) 128, 455
HpyAV CCTTC 4 cut(s) 74, 78, 215, 631
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 2 cut(s) 49, 98
HpyCH4V TGCA 1 cut(s) 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 389, 535
HpySE526I ACGT 2 cut(s) 49, 98
Hsp92II CATG 4 cut(s) 94, 341, 424, 478
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 58, 161, 640
LmnI GCTCC 2 cut(s) 87, 188
LpnPI CCDG 5 cut(s) 105, 122, 385, 522, 575
LweI GCATC 1 cut(s) 256
MaeI CTAG 5 cut(s) 266, 306, 380, 488, 647
MaeII ACGT 2 cut(s) 49, 98
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 60, 163, 642
MboI GATC 3 cut(s) 58, 161, 640
MboII GAAGA 7 cut(s) 169, 179, 242, 354, 458, 467, 635
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 695
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 626
MnlI CCTC 2 cut(s) 559, 562
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 4 cut(s) 198, 285, 471, 709
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 3 cut(s) 58, 161, 640
NlaIII CATG 4 cut(s) 94, 341, 424, 478
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 648
PciI ACATGT 1 cut(s) 474
PfeI GAWTC 3 cut(s) 39, 491, 528
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Ppu21I YACGTR 1 cut(s) 50
PscI ACATGT 1 cut(s) 474
PshAI GACNNNNGTC 1 cut(s) 138
PshBI ATTAAT 1 cut(s) 285
PsiI TTATAA 1 cut(s) 702
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 3 cut(s) 573, 601, 666
RsaNI GTAC 3 cut(s) 572, 600, 665
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 4 cut(s) 198, 285, 471, 709
Sau3AI GATC 3 cut(s) 58, 161, 640
Sau96I GGNCC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 1 cut(s) 626
SduI GDGCHC 1 cut(s) 695
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 648
SnaBI TACGTA 1 cut(s) 50
SspMI CTAG 5 cut(s) 266, 306, 380, 488, 647
StyI CCWWGG 3 cut(s) 136, 318, 646
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 2 cut(s) 52, 101
TaqI TCGA 2 cut(s) 409, 635
TatI WGTACW 2 cut(s) 599, 664
TfiI GAWTC 3 cut(s) 39, 491, 528
Tru1I TTAA 4 cut(s) 198, 285, 471, 709
Tru9I TTAA 4 cut(s) 198, 285, 471, 709
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 5 cut(s) 107, 216, 268, 626, 698
TspGWI ACGGA 1 cut(s) 275
VneI GTGCAC 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 133
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 2 cut(s) 347, 551
XceI RCATGY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XmaJI CCTAGG 1 cut(s) 646
XspI CTAG 5 cut(s) 266, 306, 380, 488, 647
ZrmI AGTACT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.