Rh2AG204100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0023990
Physical Location & Seq
Reverse (-)
20618104 .. 20618442
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG204100.1

Sequence Viewer

Length: 339 bp
ATGGCCAGAAGTCTAGTTCAACTTAGAACTCTCACCATAAGTCAATGTAGAAGCATGATGGAAATAGTATCCACACAAGAAGACGATGGAGAAAATAATATAGTTAACATGTTTTCTAGACTAGAATCTCTGACATTAAGAGATCTTCCAAGCTTGGTTGGATTCTGCTCAAGAAGTTATGCTGGATTTTCATCATCAGAGGAGGCAATCATATCTAATGGTCAGAGTAAAAGTACTACAATTATGAAAGAAATTGAAAATGGAGACTCGAAGGATCACCTAGGTGTTGACAATGCTGTACTTTACTTTCTTTTTGATGAAAAGGTGCACAACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

112

Amino Acids

12.51

Weight (kDa)

4.77

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 1 - 61 1.8e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023990)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18120
rosa_samantha Rh2AG203800 Rh2AG204100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 337
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 235, 300
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 20, 257
AleI CACNNNNGTG 1 cut(s) 282
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 258
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 1 cut(s) 282
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 326
AspA2I CCTAGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 25, 269
AvrII CCTAGG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 330
BccI CCATC 2 cut(s) 52, 80
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 4 cut(s) 14, 117, 122, 281
BfuI GTATCC 1 cut(s) 79
BglII AGATCT 1 cut(s) 142
BlnI CCTAGG 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 330
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 330
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 142, 274
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 2 cut(s) 142, 274
BssT1I CCWWGG 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 2 cut(s) 145, 277
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 142, 274
BstNSI RCATGY 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 330
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 234, 299
CviAII CATG 2 cut(s) 55, 109
CviJI RGCY 2 cut(s) 5, 153
CviKI_1 RGCY 2 cut(s) 5, 153
CviQI GTAC 2 cut(s) 234, 299
DdeI CTNAG 1 cut(s) 23
DpnI GATC 2 cut(s) 144, 276
DpnII GATC 2 cut(s) 142, 274
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 58, 112
FaiI YATR 8 cut(s) 38, 56, 101, 110, 180, 212, 245, 337
FatI CATG 2 cut(s) 54, 108
FspBI CTAG 4 cut(s) 14, 117, 122, 281
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 58, 112
HincII GTYRAC 2 cut(s) 106, 289
HindII GTYRAC 2 cut(s) 106, 289
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 3 cut(s) 125, 162, 266
HpaI GTTAAC 1 cut(s) 106
HphI GGTGA 2 cut(s) 25, 269
Hpy166II GTNNAC 3 cut(s) 106, 289, 328
Hpy188I TCNGA 3 cut(s) 132, 199, 225
Hpy188III TCNNGA 2 cut(s) 117, 171
Hpy8I GTNNAC 3 cut(s) 106, 289, 328
HpyAV CCTTC 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 2 cut(s) 58, 112
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 142, 274
LpnPI CCDG 2 cut(s) 19, 168
MaeI CTAG 4 cut(s) 14, 117, 122, 281
MalI GATC 2 cut(s) 144, 276
MboI GATC 2 cut(s) 142, 274
MboII GAAGA 2 cut(s) 92, 137
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 330
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 240, 252
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 2 cut(s) 193, 196
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 105, 137
MslI CAYNNNNRTG 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 5
NdeII GATC 2 cut(s) 142, 274
NlaIII CATG 2 cut(s) 58, 112
NspI RCATGY 1 cut(s) 112
OliI CACNNNNGTG 1 cut(s) 282
PciI ACATGT 1 cut(s) 108
PfeI GAWTC 2 cut(s) 125, 162
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 337
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 235, 300
RsaNI GTAC 2 cut(s) 234, 299
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 105, 137
Sau3AI GATC 2 cut(s) 142, 274
ScaI AGTACT 1 cut(s) 235
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 330
SetI ASST 4 cut(s) 155, 282, 286, 327
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 2 cut(s) 240, 252
SspMI CTAG 4 cut(s) 14, 117, 122, 281
StyI CCWWGG 1 cut(s) 280
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 240, 252
TatI WGTACW 2 cut(s) 233, 298
TfiI GAWTC 2 cut(s) 125, 162
Tru1I TTAA 2 cut(s) 105, 137
Tru9I TTAA 2 cut(s) 105, 137
TspDTI ATGAA 3 cut(s) 180, 260, 333
VneI GTGCAC 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 116
XceI RCATGY 1 cut(s) 112
XmaJI CCTAGG 1 cut(s) 280
XspI CTAG 4 cut(s) 14, 117, 122, 281
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.