Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0023443

Physical Location & Seq

Genomic Coordinates Forward (+)

87899556 .. 87903933

Gene Structure 4378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG663500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGCTATGCAATTTGCAGTCTCTTAAACTTTCAATCAACAAAGTTACTGGTGACATAACTGAGTTCATTGATAGTATGTCTAGATGCACAAACAGCAGCTTAGAGAGGTTGGATTTAGGTTTTAACAGTCTCACAGGAAATTTGCCAAATTCATTGGGACTTCTTAAGAAGTTAAGATTCCTCAAGTTGTGGCACAACTCATTTCAGGGTTCAATCCCAGAATCTATAGGAAACTTGACATCTTTGGAGGACTTTTACCTTGCACAGAATAAAATGGGTGGAGTCATCCCAGAAAGTTTTGGGCAGCTCTCATCCCTCGTTGCGGTAGATCTCTCTGAAAACACATGGGAAGGTGTTGTAACAGAAGCTCATTTTCTGAAACTTCGAAGCTTAGAAGAGGTGGCAATCCAGAAAGCCTCCCCAAACATTTCCCTAGTTTTCAACATTAGTTCTAAATGGATTCCTCCTTTCAAATTGGCATACTTATACCTTAGATCATGTCAACTGGGTCCCAAATTTCCTGCATGGCTTAGAAATCAGACTGAGCTTGTCACGGTGGTCCTCAATAATGCTAGGATTGCAGATTCCATACCAGATTGGTTTTGGCAGTTAGATTTGTTATTAGATGAACTAGATGTTGCTTACAATCAACTAACCGGCAAGGTGCCTAACTCGTTAAGGTTCAGCAATCTTGCTAATGCTGATTTGAGTTCAAACCACTTTGAGGGTCCCCTCCCACTTTGGTCACCAAACATTACAACACTCTACCTCAGGGATAATCAGTTTTCAGGGCCAATTCCTTCAAACATTGGTGACGTGATGCCCTCCTTGACTGATTTAGACATATCAAGGAACGGTTTGAGTGGAAGCATTCCCCTGTCTTTTGATAAAGATACATCATACCTTTACCAGGGAAAACTGAAGGTAGTTGCAAAAGGAAGAGTGCAGGACTTCGATTCCATTCTTTATCTTGTTAATAGCCTGGATCTCTCAAGCAATAACTTATCAGAATCGGAGGACGGCGGCGTCAGCTACAATGCTCCCAGCTACACTCTTAATTTCAAGGACGACACCATATGCATCGACGACATCCTCCTCCAGTCGCGGCTGTCGACCTCCACCTCCTGGAGTCTGACCCCGCCGGAGAAGTCGACCACGAGCTGGCGTATTCTGGACAACGTTCTAGAGGAAGATGAGGACAACTGGAGCTGGAGGTCACCGACGATGAACAAAGCTAGAGGTCACCGACGTCGAACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

420

Amino Acids

47.07

Weight (kDa)

5.05

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	33 - 181	2.2e-11	Leucine-rich repeat region
LRR_8	PF13855	61 - 114	2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023443)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG663500 Rh2AG663600 Rh2BG674400 Rh2DG688400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1025
AatII	GACGTC	1 cut(s)	1252
AccB1I	GGYRCC	1 cut(s)	664
AccB7I	CCANNNNNTGG	2 cut(s)	1125, 1161
AccI	GTMKAC	2 cut(s)	1112, 1151
AccII	CGCG	1 cut(s)	1105
AciI	CCGC	4 cut(s)	323, 1023, 1105, 1139
AclI	AACGTT	1 cut(s)	1179
AclWI	GGATC	1 cut(s)	993
AcsI	RAATTY	3 cut(s)	139, 148, 515
AcuI	CTGAAG	1 cut(s)	941
AcyI	GRCGYC	2 cut(s)	1026, 1249
AfiI	CCNNNNNNNGG	5 cut(s)	322, 724, 910, 1125, 1161
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	7 cut(s)	33, 213, 442, 472, 714, 804, 1063
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	3 cut(s)	909, 981, 1124
Alw26I	GTCTC	2 cut(s)	24, 134
AlwI	GGATC	1 cut(s)	993
AoxI	GGCC	1 cut(s)	791
ApeKI	GCWGC	2 cut(s)	96, 304
ApoI	RAATTY	3 cut(s)	139, 148, 515
AspS9I	GGNCC	4 cut(s)	509, 559, 728, 791
AsuHPI	GGTGA	5 cut(s)	62, 738, 824, 1209, 1235
AsuII	TTCGAA	1 cut(s)	385
AvaII	GGWCC	3 cut(s)	509, 559, 728
AxyI	CCTNAGG	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	664
BauI	CACGAG	1 cut(s)	1156
BbvI	GCAGC	2 cut(s)	108, 316
BceAI	ACGGC	1 cut(s)	1036
BciT130I	CCWGG	3 cut(s)	911, 983, 1126
BcoDI	GTCTC	2 cut(s)	24, 134
BfaI	CTAG	6 cut(s)	81, 434, 573, 632, 1184, 1236
BfmI	CTRYAG	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	164
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	4 cut(s)	97, 305, 1024, 1106
BlsI	GCNGC	4 cut(s)	98, 306, 1025, 1107
Bme1390I	CCNGG	3 cut(s)	911, 983, 1126
Bme18I	GGWCC	3 cut(s)	509, 559, 728
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	4 cut(s)	509, 559, 728, 791
BmiI	GGNNCC	5 cut(s)	510, 511, 666, 729, 730
BmrFI	CCNGG	3 cut(s)	911, 983, 1126
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	3 cut(s)	74, 810, 1089
BmuI	ACTGGG	1 cut(s)	515
BpmI	CTGGAG	4 cut(s)	1082, 1147, 1225, 1231
Bpu14I	TTCGAA	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	167, 976
BsaHI	GRCGYC	2 cut(s)	1026, 1249
BsaJI	CCNNGG	1 cut(s)	910
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 724, 910, 1125, 1161
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	4 cut(s)	52, 510, 1099, 1208
Bse21I	CCTNAGG	1 cut(s)	770
BseBI	CCWGG	3 cut(s)	911, 983, 1126
BseDI	CCNNGG	1 cut(s)	910
BseGI	GGATG	3 cut(s)	285, 311, 1089
BseLI	CCNNNNNNNGG	5 cut(s)	322, 724, 910, 1125, 1161
BseMII	CTCAG	3 cut(s)	51, 534, 784
BseNI	ACTGG	4 cut(s)	52, 510, 1099, 1208
BseRI	GAGGAG	1 cut(s)	1085
BseXI	GCAGC	2 cut(s)	108, 316
BseYI	CCCAGC	1 cut(s)	1043
BsgI	GTGCAG	1 cut(s)	965
Bsh1236I	CGCG	1 cut(s)	1105
BshFI	GGCC	1 cut(s)	793
BshNI	GGYRCC	1 cut(s)	664
BsiSI	CCGG	2 cut(s)	657, 1142
BslFI	GGGAC	3 cut(s)	171, 495, 714
BslI	CCNNNNNNNGG	5 cut(s)	322, 724, 910, 1125, 1161
BsmAI	GTCTC	2 cut(s)	24, 134
BsmFI	GGGAC	3 cut(s)	171, 495, 714
BsmI	GAATGC	1 cut(s)	870
BsnI	GGCC	1 cut(s)	793
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	328, 494, 985
BspACI	CCGC	4 cut(s)	323, 1023, 1105, 1139
BspANI	GGCC	1 cut(s)	793
BspCNI	CTCAG	3 cut(s)	52, 535, 783
BspFNI	CGCG	1 cut(s)	1105
BspLI	GGNNCC	5 cut(s)	510, 511, 666, 729, 730
BspPI	GGATC	1 cut(s)	993
BspT104I	TTCGAA	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	664
BspTI	CTTAAG	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	656
BsrI	ACTGG	4 cut(s)	52, 510, 1099, 1208
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	1 cut(s)	910
BssMI	GATC	3 cut(s)	328, 494, 985
BssNI	GRCGYC	2 cut(s)	1026, 1249
BssSI	CACGAG	1 cut(s)	1156
Bst2BI	CACGAG	1 cut(s)	1156
Bst2UI	CCWGG	3 cut(s)	911, 983, 1126
Bst4CI	ACNGT	3 cut(s)	128, 556, 857
Bst6I	CTCTTC	2 cut(s)	390, 934
BstACI	GRCGYC	2 cut(s)	1026, 1249
BstAFI	CTTAAG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	1163
BstDEI	CTNAG	7 cut(s)	60, 100, 391, 491, 530, 543, 770
BstEII	GGTNACC	3 cut(s)	744, 1215, 1241
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	3 cut(s)	285, 311, 1089
BstFNI	CGCG	1 cut(s)	1105
BstKTI	GATC	3 cut(s)	331, 497, 988
BstMAI	GTCTC	2 cut(s)	24, 134
BstMBI	GATC	3 cut(s)	328, 494, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 578, 1029
BstNI	CCWGG	3 cut(s)	911, 983, 1126
BstPI	GGTNACC	3 cut(s)	744, 1215, 1241
BstSCI	CCNGG	3 cut(s)	909, 981, 1124
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	1105
BstV1I	GCAGC	2 cut(s)	108, 316
BstX2I	RGATCY	2 cut(s)	328, 985
BstYI	RGATCY	2 cut(s)	328, 985
Bsu36I	CCTNAGG	1 cut(s)	770
BsuRI	GGCC	1 cut(s)	793
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	285, 311, 1089
Cac8I	GCNNGC	1 cut(s)	1163
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	4 cut(s)	509, 559, 728, 791
CseI	GACGC	1 cut(s)	1015
CviAII	CATG	3 cut(s)	345, 498, 525
DdeI	CTNAG	7 cut(s)	60, 100, 391, 491, 530, 543, 770
DpnI	GATC	3 cut(s)	330, 496, 987
DpnII	GATC	3 cut(s)	328, 494, 985
DrdI	GACNNNNNNGTC	1 cut(s)	1025
DseDI	GACNNNNNNGTC	1 cut(s)	1025
Eam1104I	CTCTTC	2 cut(s)	390, 934
EarI	CTCTTC	2 cut(s)	390, 934
Eco47I	GGWCC	3 cut(s)	509, 559, 728
Eco57I	CTGAAG	1 cut(s)	941
Eco81I	CCTNAGG	1 cut(s)	770
Eco91I	GGTNACC	3 cut(s)	744, 1215, 1241
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoO109I	RGGNCCY	2 cut(s)	509, 728
EcoO65I	GGTNACC	3 cut(s)	744, 1215, 1241
EcoRII	CCWGG	3 cut(s)	909, 981, 1124
EcoT22I	ATGCAT	1 cut(s)	1082
FaeI	CATG	3 cut(s)	348, 501, 528
FaqI	GGGAC	3 cut(s)	171, 495, 714
FatI	CATG	3 cut(s)	344, 497, 524
FauI	CCCGC	1 cut(s)	1146
FauNDI	CATATG	1 cut(s)	1076
FblI	GTMKAC	2 cut(s)	1112, 1151
Fnu4HI	GCNGC	4 cut(s)	97, 305, 1024, 1106
FokI	GGATG	3 cut(s)	272, 298, 1076
Fsp4HI	GCNGC	4 cut(s)	97, 305, 1024, 1106
FspBI	CTAG	6 cut(s)	81, 434, 573, 632, 1184, 1236
GluI	GCNGC	4 cut(s)	97, 305, 1024, 1106
GsaI	CCCAGC	1 cut(s)	1047
GsuI	CTGGAG	4 cut(s)	1082, 1147, 1225, 1231
HaeIII	GGCC	1 cut(s)	793
HapII	CCGG	2 cut(s)	657, 1142
HgaI	GACGC	1 cut(s)	1015
Hin1I	GRCGYC	2 cut(s)	1026, 1249
Hin1II	CATG	3 cut(s)	348, 501, 528
HincII	GTYRAC	3 cut(s)	503, 1113, 1152
HindII	GTYRAC	3 cut(s)	503, 1113, 1152
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	8 cut(s)	177, 221, 282, 460, 584, 956, 1010, 1129
HpaII	CCGG	2 cut(s)	657, 1142
HphI	GGTGA	5 cut(s)	62, 738, 824, 1209, 1235
Hpy166II	GTNNAC	3 cut(s)	503, 1113, 1152
Hpy188I	TCNGA	7 cut(s)	337, 378, 540, 1009, 1015, 1134, 1262
Hpy188III	TCNNGA	4 cut(s)	81, 409, 1172, 1184
Hpy8I	GTNNAC	3 cut(s)	503, 1113, 1152
Hpy99I	CGWCG	4 cut(s)	1088, 1225, 1251, 1254
HpyAV	CCTTC	3 cut(s)	344, 810, 916
HpyCH4III	ACNGT	3 cut(s)	128, 556, 857
HpyCH4IV	ACGT	3 cut(s)	816, 1179, 1249
HpyCH4V	TGCA	9 cut(s)	9, 16, 87, 263, 524, 581, 932, 946, 1080
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 578, 1029
HpyF3I	CTNAG	7 cut(s)	60, 100, 391, 491, 530, 543, 770
HpySE526I	ACGT	3 cut(s)	816, 1179, 1249
Hsp92I	GRCGYC	2 cut(s)	1026, 1249
Hsp92II	CATG	3 cut(s)	348, 501, 528
KflI	GGGWCCC	2 cut(s)	509, 728
Kzo9I	GATC	3 cut(s)	328, 494, 985
LmnI	GCTCC	2 cut(s)	1045, 1206
Lsp1109I	GCAGC	2 cut(s)	108, 316
LweI	GCATC	3 cut(s)	74, 810, 1089
MaeI	CTAG	6 cut(s)	81, 434, 573, 632, 1184, 1236
MaeII	ACGT	3 cut(s)	816, 1179, 1249
MaeIII	GTNAC	8 cut(s)	43, 50, 358, 550, 744, 812, 1215, 1241
MalI	GATC	3 cut(s)	330, 496, 987
MboI	GATC	3 cut(s)	328, 494, 985
MboII	GAAGA	3 cut(s)	407, 951, 1202
MflI	RGATCY	2 cut(s)	328, 985
MluCI	AATT	7 cut(s)	10, 139, 148, 473, 515, 795, 1057
MlyI	GAGTC	2 cut(s)	291, 1138
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	1082
MseI	TTAA	7 cut(s)	24, 123, 165, 173, 677, 975, 1056
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	2 cut(s)	657, 1142
MspR9I	CCNGG	3 cut(s)	911, 983, 1126
Mva1269I	GAATGC	1 cut(s)	870
MvaI	CCWGG	3 cut(s)	911, 983, 1126
MvnI	CGCG	1 cut(s)	1105
MwoI	GCNNNNNNNGC	3 cut(s)	93, 578, 1029
NdeI	CATATG	1 cut(s)	1076
NdeII	GATC	3 cut(s)	328, 494, 985
NlaIII	CATG	3 cut(s)	348, 501, 528
NlaIV	GGNNCC	5 cut(s)	510, 511, 666, 729, 730
NmuCI	GTSAC	6 cut(s)	50, 550, 744, 812, 1215, 1241
NsiI	ATGCAT	1 cut(s)	1082
NspV	TTCGAA	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	1109
PctI	GAATGC	1 cut(s)	870
PfeI	GAWTC	6 cut(s)	177, 221, 460, 584, 956, 1010
PflMI	CCANNNNNTGG	2 cut(s)	1125, 1161
PfoI	TCCNGGA	1 cut(s)	1124
PkrI	GCNGC	4 cut(s)	98, 306, 1025, 1107
PleI	GAGTC	2 cut(s)	290, 1137
PpsI	GAGTC	2 cut(s)	290, 1137
PpuMI	RGGWCCY	2 cut(s)	509, 728
Psp1406I	AACGTT	1 cut(s)	1179
Psp5II	RGGWCCY	2 cut(s)	509, 728
Psp6I	CCWGG	3 cut(s)	909, 981, 1124
PspEI	GGTNACC	3 cut(s)	744, 1215, 1241
PspFI	CCCAGC	1 cut(s)	1043
PspGI	CCWGG	3 cut(s)	909, 981, 1124
PspN4I	GGNNCC	5 cut(s)	510, 511, 666, 729, 730
PspPI	GGNCC	4 cut(s)	509, 559, 728, 791
PspPPI	RGGWCCY	2 cut(s)	509, 728
PsuI	RGATCY	2 cut(s)	328, 985
SalI	GTCGAC	2 cut(s)	1111, 1150
SaqAI	TTAA	7 cut(s)	24, 123, 165, 173, 677, 975, 1056
SatI	GCNGC	4 cut(s)	97, 305, 1024, 1106
Sau3AI	GATC	3 cut(s)	328, 494, 985
Sau96I	GGNCC	4 cut(s)	509, 559, 728, 791
SchI	GAGTC	2 cut(s)	291, 1138
ScrFI	CCNGG	3 cut(s)	911, 983, 1126
SfaNI	GCATC	3 cut(s)	74, 810, 1089
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	385
SinI	GGWCC	3 cut(s)	509, 559, 728
SmlI	CTYRAG	3 cut(s)	164, 182, 991
SmoI	CTYRAG	3 cut(s)	164, 182, 991
Sse9I	AATT	7 cut(s)	10, 139, 148, 473, 515, 795, 1057
SsiI	CCGC	4 cut(s)	323, 1023, 1105, 1139
SspMI	CTAG	6 cut(s)	81, 434, 573, 632, 1184, 1236
StyD4I	CCNGG	3 cut(s)	909, 981, 1124
TaaI	ACNGT	3 cut(s)	128, 556, 857
TaiI	ACGT	3 cut(s)	819, 1182, 1252
TaqI	TCGA	6 cut(s)	385, 954, 1083, 1112, 1151, 1252
TasI	AATT	7 cut(s)	10, 139, 148, 473, 515, 795, 1057
TauI	GCSGC	2 cut(s)	1026, 1108
TfiI	GAWTC	6 cut(s)	177, 221, 460, 584, 956, 1010
Tru1I	TTAA	7 cut(s)	24, 123, 165, 173, 677, 975, 1056
Tru9I	TTAA	7 cut(s)	24, 123, 165, 173, 677, 975, 1056
TseFI	GTSAC	6 cut(s)	50, 550, 744, 812, 1215, 1241
TseI	GCWGC	2 cut(s)	96, 304
Tsp45I	GTSAC	6 cut(s)	50, 550, 744, 812, 1215, 1241
TspDTI	ATGAA	4 cut(s)	55, 141, 642, 1241
Van91I	CCANNNNNTGG	2 cut(s)	1125, 1161
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	509, 559, 728
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	3 cut(s)	139, 148, 515
XbaI	TCTAGA	2 cut(s)	80, 1183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XmiI	GTMKAC	2 cut(s)	1112, 1151
XspI	CTAG	6 cut(s)	81, 434, 573, 632, 1184, 1236
ZraI	GACGTC	1 cut(s)	1250
Zsp2I	ATGCAT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.