Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0023443

Physical Location & Seq

Genomic Coordinates Forward (+)

87904558 .. 87906687

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG663600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGAATACTAAGCAAACTGCAGCGAGCAGAAGCTGGCAGAGGAAAACAGATGGTGTAATTGCCGCTTCTCACAGTTTCACCCTATTCATCTTTACTGATGTAAAAGATTTTGACCATTCCTCGTCATCATCAGTTCCCGCCAAAACTTTGATACCTGTCACCATGATTAGTGCGCACCTTACGTACCTTGGGCTCCATCACCAGTTTAAAACCACCACCACCAACATCTCCTCCGTCTCTCTCCGGCGTGCTCCCGAGAATTCAGATATTGGAGGTCAGTTGCCGAGAAACTTGGGGATGCTATGCAATTTGCAATCTCTTAAACTTTCAATCAACAAAGTTACTGGTGAGATGACTGAGTTCATTGATTGTATGTCTAGATGCACAAACAGCAGCTTAGAGAGGTTGGATTTAGGTTTTAACAGTCTCACAGGAAATTTGCCTAATTCATTGGGACTTCTTAAGAAGTTAAGATTCCTCAAGTTGTGGCACAACTCATTTCAGGGTTCAATCCCAGAATCTATTGGAAACTTGACATCTTTGGAGGACTTTTACCTTGCACAGAATAAAATGAGTGGAGTCATCCCAGAAAGTTTTGGGCAGCTCTCATCTTGCTGTAGATCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

210

Amino Acids

23.17

Weight (kDa)

9.2

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023443)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG663500 Rh2AG663600 Rh2BG674400 Rh2DG688400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	177
AciI	CCGC	2 cut(s)	66, 141
AcsI	RAATTY	2 cut(s)	262, 439
AfaI	GTAC	1 cut(s)	188
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	2 cut(s)	333, 513
AluBI	AGCT	3 cut(s)	36, 399, 607
AluI	AGCT	3 cut(s)	36, 399, 607
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	244, 434
AlwNI	CAGNNNCTG	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	257
ApeKI	GCWGC	3 cut(s)	23, 396, 604
ApoI	RAATTY	2 cut(s)	262, 439
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	73, 154, 194, 362
AvaI	CYCGRG	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	35, 408, 616
BccI	CCATC	2 cut(s)	47, 207
BcoDI	GTCTC	2 cut(s)	244, 434
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	21, 619
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	4 cut(s)	24, 66, 397, 605
BlsI	GCNGC	4 cut(s)	25, 67, 398, 606
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	291, 374
BpuEI	CTTGAG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse1I	ACTGG	2 cut(s)	205, 352
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	306, 585
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	205, 352
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	35, 408, 616
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	471
BsmAI	GTCTC	2 cut(s)	244, 434
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	198, 256
Bsp143I	GATC	1 cut(s)	623
BspACI	CCGC	2 cut(s)	66, 141
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	197
BspMAI	CTGCAG	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	205, 352
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	623
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	77, 428
BstAFI	CTTAAG	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	28, 38, 252
BstDEI	CTNAG	3 cut(s)	12, 360, 400
BstF5I	GGATG	2 cut(s)	306, 585
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	626
BstMAI	GTCTC	2 cut(s)	244, 434
BstMBI	GATC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	21, 619
BstSNI	TACGTA	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	35, 408, 616
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BtsCI	GGATG	2 cut(s)	306, 585
Cac8I	GCNNGC	3 cut(s)	28, 38, 252
CaiI	CAGNNNCTG	1 cut(s)	36
CfoI	GCGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	4 cut(s)	36, 196, 399, 607
CviKI_1	RGCY	4 cut(s)	36, 196, 399, 607
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	12, 360, 400
DpnI	GATC	1 cut(s)	625
DpnII	GATC	1 cut(s)	623
DraI	TTTAAA	1 cut(s)	211
Eco105I	TACGTA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	1 cut(s)	169
FaiI	YATR	3 cut(s)	167, 307, 377
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	24, 66, 397, 605
FokI	GGATG	2 cut(s)	313, 572
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	4 cut(s)	24, 66, 397, 605
FspAI	RTGCGCAY	1 cut(s)	177
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	4 cut(s)	24, 66, 397, 605
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	477, 521, 582
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	4 cut(s)	73, 154, 194, 362
Hpy188I	TCNGA	2 cut(s)	268, 632
Hpy188III	TCNNGA	2 cut(s)	257, 381
HpyCH4III	ACNGT	2 cut(s)	77, 428
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	23, 309, 316, 387, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	3 cut(s)	12, 360, 400
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	201, 259
LpnPI	CCDG	9 cut(s)	22, 171, 218, 260, 333, 420, 491, 531, 603
Lsp1109I	GCAGC	3 cut(s)	35, 408, 616
LweI	GCATC	2 cut(s)	291, 374
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	160, 343
MalI	GATC	1 cut(s)	625
MboI	GATC	1 cut(s)	623
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	198, 256
MluCI	AATT	5 cut(s)	60, 262, 310, 439, 448
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	7 cut(s)	36, 133, 244, 269, 399, 491, 541
MseI	TTAA	5 cut(s)	210, 324, 423, 465, 473
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	393
NdeII	GATC	1 cut(s)	623
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	197
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	160
NsbI	TGCGCA	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	477, 521
PkrI	GCNGC	4 cut(s)	25, 67, 398, 606
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Ppu21I	YACGTR	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	5 cut(s)	210, 324, 423, 465, 473
SatI	GCNGC	4 cut(s)	24, 66, 397, 605
Sau3AI	GATC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	591
SduI	GDGCHC	2 cut(s)	198, 256
SfaNI	GCATC	2 cut(s)	291, 374
SfcI	CTRYAG	2 cut(s)	21, 619
SmlI	CTYRAG	2 cut(s)	464, 482
SmoI	CTYRAG	2 cut(s)	464, 482
SnaBI	TACGTA	1 cut(s)	186
Sse9I	AATT	5 cut(s)	60, 262, 310, 439, 448
SsiI	CCGC	2 cut(s)	66, 141
SspMI	CTAG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	77, 428
TaiI	ACGT	1 cut(s)	188
TasI	AATT	5 cut(s)	60, 262, 310, 439, 448
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	2 cut(s)	477, 521
Tru1I	TTAA	5 cut(s)	210, 324, 423, 465, 473
Tru9I	TTAA	5 cut(s)	210, 324, 423, 465, 473
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	23, 396, 604
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	4 cut(s)	17, 79, 355, 441
TspGWI	ACGGA	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	2 cut(s)	262, 439
XbaI	TCTAGA	1 cut(s)	380
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.