Rh2DG688400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0023443
Physical Location & Seq
Forward (+)
90589894 .. 90590347
454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG688400.1

Sequence Viewer

Length: 312 bp
ATGAAGAATACTAAGCAAACTGCAGCGAGCAGAAGCTGGCAGAGGAAAACAGATGGTGTAATTGCCGCTTCTCACAGTTTCACCCTATTCATCTATACTGATGTAAAAGATTTTGATCATTCCTCGTCATCATCAGTTCCCGCCAAAACTTTGATACGAGTCACCATGATTAGTGCGCACCTTACGTACCTTGGGCTCCATCACCAGTTTAAAACCACCACCACCAACATCTCCTCCGTCTGTCTCCGGCGTGCTCCCGGTATGACCTCGCTAACGAAAAGCTTATGCTTTTCCCTTTCTAATATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.38

Weight (kDa)

10.11

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023443)

Species Orthologous Gene IDs
rosa_samantha Rh2AG663500 Rh2AG663600 Rh2BG674400 Rh2DG688400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
AciI CCGC 2 cut(s) 66, 141
AfaI GTAC 1 cut(s) 188
AluBI AGCT 2 cut(s) 36, 282
AluI AGCT 2 cut(s) 36, 282
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 73, 154, 194
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 47, 207
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 24, 66
BlsI GCNGC 2 cut(s) 25, 67
Bme1390I CCNGG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse1I ACTGG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 114
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 247, 258
BsmAI GTCTC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 198, 256
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 2 cut(s) 66, 141
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 28, 38, 252
BstDEI CTNAG 2 cut(s) 12, 309
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 21
BstSNI TACGTA 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 28, 38, 252
CaiI CAGNNNCTG 1 cut(s) 36
CfoI GCGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 166
CviJI RGCY 3 cut(s) 36, 196, 282
CviKI_1 RGCY 3 cut(s) 36, 196, 282
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 12, 309
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DraI TTTAAA 1 cut(s) 211
Eco105I TACGTA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 96, 167, 263, 286
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 148
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 24, 66
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 24, 66
FspAI RTGCGCAY 1 cut(s) 177
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 24, 66
HapII CCGG 2 cut(s) 247, 258
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 247, 258
HphI GGTGA 3 cut(s) 73, 154, 194
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 12, 309
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 201, 259
LpnPI CCDG 4 cut(s) 22, 218, 260, 271
Lsp1109I GCAGC 1 cut(s) 35
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 198, 256
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 4 cut(s) 36, 133, 244, 277
MseI TTAA 1 cut(s) 210
MspI CCGG 2 cut(s) 247, 258
MspR9I CCNGG 1 cut(s) 258
NciI CCSGG 1 cut(s) 258
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 177
PkrI GCNGC 2 cut(s) 25, 67
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 36
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 24, 66
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 198, 256
SetI ASST 6 cut(s) 38, 183, 188, 192, 269, 284
SfcI CTRYAG 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 186
Sse9I AATT 1 cut(s) 60
SsiI CCGC 2 cut(s) 66, 141
SspI AATATT 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 188
TasI AATT 1 cut(s) 60
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 17, 79
TspGWI ACGGA 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.