Rh2BG167300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0026230
Physical Location & Seq
Reverse (-)
14752217 .. 14765122
12906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG167300.1

Sequence Viewer

Length: 963 bp
ATGTCCTCCGCCGCCTCCTCTTTTAATCCTGAATGTCCCAACAAATTTCAAGTTGAAGACCTGTCTCTCGAGGAGATAGCAGTGAGGATTCAAGATTATATAGAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGCTTTTCTTAGATGGTATAGCAACAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAATAAATTTCAAGTTGAAGACCTCTCTCTCGAGGAGATAGCAGTGAGGATTCAAGATTATATAAAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGCTTTTCTTAGATGGTATCGCAGCAATATTCGTATCATATCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAACAAATTTCAAGTTGAAGACCTCTCTCTCGAGGAGATAGCAGTGGGGATTCAAGATTATATAGAAGATACAATGCAGCCTCTGCCTCTCACTTGGGAAGTACCAAATAGAGAGCATGTCGTCCACGGAGTGGATGCTTTTCTTAGATGGTATAGCAGCAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAACAAATTTCAAGTTGAAGACCTGTCTCTCGAGGAGATAGCAGTGAGGATTCAAGATTATATAGAAGCTCTTGGTGCCCTGGCTTACTTAAATCTCAACATATGCAGTTTATCTGATGAAGGATGTGATAAGTTTTCTGGCCTTACAAACTTGAAGGTTTTGAGCTTGGGATTCAACAGTATCACAGATGCATGTTTGGTGCAGCTAAAAGGTTTGACAAATTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCGAACTGGGGTTTGTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

36.17

Weight (kDa)

4.46

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 250 - 308 6.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026230)

Species Orthologous Gene IDs
rosa_samantha Rh2BG167300 Rh2CG167600 Rh2DG166200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 743
AccB7I CCANNNNNTGG 3 cut(s) 169, 379, 589
AciI CCGC 8 cut(s) 9, 12, 219, 222, 429, 432, 639, 642
AcsI RAATTY 5 cut(s) 44, 254, 464, 674, 889
AdeI CACNNNGTG 3 cut(s) 169, 379, 589
AfaI GTAC 4 cut(s) 141, 351, 561, 956
AfiI CCNNNNNNNGG 3 cut(s) 169, 379, 589
AjnI CCWGG 4 cut(s) 131, 341, 747, 906
AluBI AGCT 4 cut(s) 737, 834, 874, 900
AluI AGCT 4 cut(s) 737, 834, 874, 900
Alw26I GTCTC 2 cut(s) 69, 699
AlwNI CAGNNNCTG 3 cut(s) 121, 331, 541
Ama87I CYCGRG 4 cut(s) 68, 278, 488, 698
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 6 cut(s) 115, 325, 405, 535, 615, 871
ApoI RAATTY 5 cut(s) 44, 254, 464, 674, 889
AsuHPI GGTGA 3 cut(s) 121, 331, 938
AvaI CYCGRG 4 cut(s) 68, 278, 488, 698
BaeGI GKGCMC 1 cut(s) 748
BanI GGYRCC 1 cut(s) 743
BbsI GAAGAC 4 cut(s) 63, 273, 483, 693
BbvI GCAGC 6 cut(s) 127, 337, 417, 547, 627, 883
BccI CCATC 3 cut(s) 180, 390, 600
BcgI CGANNNNNNTGC 2 cut(s) 920, 954
BciT130I CCWGG 4 cut(s) 133, 343, 749, 908
BcoDI GTCTC 2 cut(s) 69, 699
Bme1390I CCNGG 4 cut(s) 133, 343, 749, 908
BmeT110I CYCGRG 4 cut(s) 68, 278, 488, 698
BmiI GGNNCC 1 cut(s) 745
BmrFI CCNGG 4 cut(s) 133, 343, 749, 908
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 4 cut(s) 163, 373, 583, 847
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 4 cut(s) 63, 273, 483, 693
BsaJI CCNNGG 6 cut(s) 132, 163, 342, 373, 583, 747
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 379, 589
Bse1I ACTGG 1 cut(s) 950
BseBI CCWGG 4 cut(s) 133, 343, 749, 908
BseDI CCNNGG 6 cut(s) 132, 163, 342, 373, 583, 747
BseGI GGATG 4 cut(s) 178, 388, 598, 797
BseLI CCNNNNNNNGG 3 cut(s) 169, 379, 589
BseNI ACTGG 1 cut(s) 950
BseRI GAGGAG 8 cut(s) 7, 86, 217, 296, 427, 506, 637, 716
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 6 cut(s) 127, 337, 417, 547, 627, 883
BsgI GTGCAG 1 cut(s) 890
BshFI GGCC 1 cut(s) 810
BshNI GGYRCC 1 cut(s) 743
BsiHKCI CYCGRG 4 cut(s) 68, 278, 488, 698
BslFI GGGAC 4 cut(s) 21, 231, 441, 651
BslI CCNNNNNNNGG 3 cut(s) 169, 379, 589
BsmAI GTCTC 2 cut(s) 69, 699
BsmFI GGGAC 4 cut(s) 21, 231, 441, 651
BsnI GGCC 1 cut(s) 810
BsoBI CYCGRG 4 cut(s) 68, 278, 488, 698
Bsp1286I GDGCHC 1 cut(s) 748
BspACI CCGC 8 cut(s) 9, 12, 219, 222, 429, 432, 639, 642
BspANI GGCC 1 cut(s) 810
BspLI GGNNCC 1 cut(s) 745
BspT107I GGYRCC 1 cut(s) 743
BsrI ACTGG 1 cut(s) 950
BssECI CCNNGG 6 cut(s) 132, 163, 342, 373, 583, 747
Bst2UI CCWGG 4 cut(s) 133, 343, 749, 908
Bst4CI ACNGT 1 cut(s) 848
BstAPI GCANNNNNTGC 3 cut(s) 121, 331, 541
BstC8I GCNNGC 1 cut(s) 939
BstDEI CTNAG 3 cut(s) 182, 392, 602
BstDSI CCRYGG 3 cut(s) 163, 373, 583
BstF5I GGATG 4 cut(s) 178, 388, 598, 797
BstMAI GTCTC 2 cut(s) 69, 699
BstMWI GCNNNNNNNGC 4 cut(s) 121, 331, 541, 743
BstNI CCWGG 4 cut(s) 133, 343, 749, 908
BstNSI RCATGY 4 cut(s) 158, 368, 578, 864
BstSCI CCNGG 4 cut(s) 131, 341, 747, 906
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 6 cut(s) 127, 337, 417, 547, 627, 883
BstV2I GAAGAC 4 cut(s) 63, 273, 483, 693
BsuRI GGCC 1 cut(s) 810
BtgI CCRYGG 3 cut(s) 163, 373, 583
BtsCI GGATG 4 cut(s) 178, 388, 598, 797
BtsI GCAGTG 4 cut(s) 87, 297, 507, 717
BtsIMutI CAGTG 4 cut(s) 87, 297, 507, 717
Cac8I GCNNGC 1 cut(s) 939
CaiI CAGNNNCTG 3 cut(s) 121, 331, 541
Csp6I GTAC 4 cut(s) 140, 350, 560, 955
CviAII CATG 6 cut(s) 155, 211, 365, 575, 631, 861
CviQI GTAC 4 cut(s) 140, 350, 560, 955
DdeI CTNAG 3 cut(s) 182, 392, 602
DraIII CACNNNGTG 3 cut(s) 169, 379, 589
EciI GGCGGA 3 cut(s) 208, 418, 628
Eco88I CYCGRG 4 cut(s) 68, 278, 488, 698
EcoRII CCWGG 4 cut(s) 131, 341, 747, 906
EcoT22I ATGCAT 1 cut(s) 862
FaeI CATG 6 cut(s) 158, 214, 368, 578, 634, 864
FaqI GGGAC 4 cut(s) 21, 231, 441, 651
FatI CATG 6 cut(s) 154, 210, 364, 574, 630, 860
FauNDI CATATG 1 cut(s) 770
FokI GGATG 4 cut(s) 185, 395, 605, 804
HaeIII GGCC 1 cut(s) 810
Hin1II CATG 6 cut(s) 158, 214, 368, 578, 634, 864
HinfI GANTC 6 cut(s) 88, 298, 508, 718, 840, 911
HphI GGTGA 3 cut(s) 121, 331, 938
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 1 cut(s) 784
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 2 cut(s) 782, 817
HpyCH4III ACNGT 1 cut(s) 848
HpyCH4V TGCA 6 cut(s) 115, 325, 535, 774, 860, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 331, 541, 743
HpyF3I CTNAG 3 cut(s) 182, 392, 602
Hsp92II CATG 6 cut(s) 158, 214, 368, 578, 634, 864
Lsp1109I GCAGC 6 cut(s) 127, 337, 417, 547, 627, 883
LweI GCATC 4 cut(s) 163, 373, 583, 847
MaeIII GTNAC 1 cut(s) 926
MboII GAAGA 6 cut(s) 68, 116, 278, 488, 536, 698
MhlI GDGCHC 1 cut(s) 748
MluCI AATT 5 cut(s) 44, 254, 464, 674, 889
Mph1103I ATGCAT 1 cut(s) 862
MseI TTAA 2 cut(s) 24, 758
MspR9I CCNGG 4 cut(s) 133, 343, 749, 908
MvaI CCWGG 4 cut(s) 133, 343, 749, 908
MwoI GCNNNNNNNGC 4 cut(s) 121, 331, 541, 743
NdeI CATATG 1 cut(s) 770
NlaIII CATG 6 cut(s) 158, 214, 368, 578, 634, 864
NlaIV GGNNCC 1 cut(s) 745
NmuCI GTSAC 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 4 cut(s) 158, 368, 578, 864
PaeR7I CTCGAG 4 cut(s) 68, 278, 488, 698
PfeI GAWTC 6 cut(s) 88, 298, 508, 718, 840, 911
PflMI CCANNNNNTGG 3 cut(s) 169, 379, 589
Psp6I CCWGG 4 cut(s) 131, 341, 747, 906
PspGI CCWGG 4 cut(s) 131, 341, 747, 906
PspN4I GGNNCC 1 cut(s) 745
PstNI CAGNNNCTG 3 cut(s) 121, 331, 541
RsaI GTAC 4 cut(s) 141, 351, 561, 956
RsaNI GTAC 4 cut(s) 140, 350, 560, 955
SaqAI TTAA 2 cut(s) 24, 758
ScrFI CCNGG 4 cut(s) 133, 343, 749, 908
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 4 cut(s) 163, 373, 583, 847
Sfr274I CTCGAG 4 cut(s) 68, 278, 488, 698
SlaI CTCGAG 4 cut(s) 68, 278, 488, 698
SmlI CTYRAG 4 cut(s) 68, 278, 488, 698
SmoI CTYRAG 4 cut(s) 68, 278, 488, 698
Sse9I AATT 5 cut(s) 44, 254, 464, 674, 889
SsiI CCGC 8 cut(s) 9, 12, 219, 222, 429, 432, 639, 642
SspI AATATT 3 cut(s) 202, 412, 622
StyD4I CCNGG 4 cut(s) 131, 341, 747, 906
TaaI ACNGT 1 cut(s) 848
TaqI TCGA 4 cut(s) 69, 279, 489, 699
TasI AATT 5 cut(s) 44, 254, 464, 674, 889
TatI WGTACW 1 cut(s) 954
TauI GCSGC 4 cut(s) 14, 224, 434, 644
TfiI GAWTC 6 cut(s) 88, 298, 508, 718, 840, 911
Tru1I TTAA 2 cut(s) 24, 758
Tru9I TTAA 2 cut(s) 24, 758
TscAI CASTG 4 cut(s) 87, 297, 507, 717
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 6 cut(s) 115, 325, 405, 535, 615, 871
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 1 cut(s) 801
TspGWI ACGGA 3 cut(s) 180, 390, 600
TspRI CASTG 4 cut(s) 87, 297, 507, 717
Van91I CCANNNNNTGG 3 cut(s) 169, 379, 589
XapI RAATTY 5 cut(s) 44, 254, 464, 674, 889
XceI RCATGY 4 cut(s) 158, 368, 578, 864
XhoI CTCGAG 4 cut(s) 68, 278, 488, 698
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.