Rh2DG166200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0026230
Physical Location & Seq
Reverse (-)
14470043 .. 14490558
20516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG166200.1

Sequence Viewer

Length: 1242 bp
ATGGCGCAGGTCATTTTCGATCTCCTTGGCATTGTTTGCCACATTGTTTTGGATCTTGGCCATGATAATAAAGACGTTTGGTTTGCTGAGAAGCTGGCTAGCTCAGCTGGAGAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGTTTTTCTTAGATGGTATCGCAGCAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTTAATCCTGAATGTCCCAACAAATTTCAAGTTGAAGACCTGTCTCTCGAGGAGATAGCAGTGAGGATTCAAGATTATATAGAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGCTTTTCTTAGATGGTATAGCAACAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAATAAATTTCAAGTTGAAGACCTCTCTCTCGAGGAGATAGCAGTGAGGATTCAAGATTATATAAAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGCTTTTCTTAGATGGTATCGCAGCAATATTCGTATCATATCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAACAAATTTCAAGTTGAAGACCTCTCTCTCGAGGAGATAGCAGTGGGGATTCAAGATTATATAGAAGATACAATGCAGCCTCTGCCTCTCACTTGGGAAGTACCAAATAGAGAGCATGTCGTCCACGGAGTGGATGCTTTTCTTAGATGGTATAGCAGCAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAACAAATTTCAAGTTGAAGACCTGTCTCTCGAGGAGATAGCAGTGAGGATTCAAGATTATATAGAAGATCATCAATTGGTCTATTCCCAATCTCTCACTCATGATTCTCTCCAGGCTTTTAGAGATTGTGCTCTTGAGGATGTTGGTTTGGGCGAATACCCTTCTGTGAATGATAGTTGGATGGATGCCATCTGTTCACAAGGTTCATCTCTACTATCTCTTGATCTTTCTGGTTCCGAGGTGACAGATGCTGGATTGGTTCTCCTAAAACACTGCTCGAACCTCCAATCATTAACTCATAATTACTGTGATCATGTTTCAGAACATGGACTTAAGCACATACATCAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

413

Amino Acids

47.18

Weight (kDa)

4.68

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 303 - 410 5.3e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026230)

Species Orthologous Gene IDs
rosa_samantha Rh2BG167300 Rh2CG167600 Rh2DG166200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 178, 388, 598, 808
AciI CCGC 8 cut(s) 228, 231, 438, 441, 648, 651, 858, 861
AclWI GGATC 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 4 cut(s) 263, 473, 683, 893
AdeI CACNNNGTG 4 cut(s) 178, 388, 598, 808
AfaI GTAC 4 cut(s) 150, 360, 570, 780
AfiI CCNNNNNNNGG 4 cut(s) 178, 388, 598, 808
AflII CTTAAG 1 cut(s) 1220
AjnI CCWGG 4 cut(s) 140, 350, 560, 999
AluBI AGCT 3 cut(s) 94, 102, 107
AluI AGCT 3 cut(s) 94, 102, 107
Alw21I GWGCWC 1 cut(s) 1021
Alw26I GTCTC 2 cut(s) 288, 918
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 5 cut(s) 130, 340, 550, 760, 1139
Ama87I CYCGRG 4 cut(s) 287, 497, 707, 917
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 7 cut(s) 124, 204, 334, 544, 624, 754, 834
ApoI RAATTY 4 cut(s) 263, 473, 683, 893
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 130, 340, 550, 1141
AsuNHI GCTAGC 1 cut(s) 98
AvaI CYCGRG 4 cut(s) 287, 497, 707, 917
BalI TGGCCA 1 cut(s) 60
BbsI GAAGAC 4 cut(s) 282, 492, 702, 912
Bbv12I GWGCWC 1 cut(s) 1021
BbvI GCAGC 7 cut(s) 136, 216, 346, 556, 636, 766, 846
BccI CCATC 6 cut(s) 189, 399, 609, 819, 1063, 1085
BciT130I CCWGG 4 cut(s) 142, 352, 562, 1001
BclI TGATCA 1 cut(s) 1198
BcoDI GTCTC 2 cut(s) 288, 918
BfaI CTAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 1220
BlpI GCTNAGC 1 cut(s) 103
Bme1390I CCNGG 4 cut(s) 142, 352, 562, 1001
BmeT110I CYCGRG 4 cut(s) 287, 497, 707, 917
BmiI GGNNCC 1 cut(s) 1123
BmrFI CCNGG 4 cut(s) 142, 352, 562, 1001
BmsI GCATC 5 cut(s) 382, 592, 802, 1063, 1126
BmtI GCTAGC 1 cut(s) 102
BpiI GAAGAC 4 cut(s) 282, 492, 702, 912
BpmI CTGGAG 2 cut(s) 129, 983
Bpu1102I GCTNAGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 1043
BsaJI CCNNGG 9 cut(s) 25, 141, 172, 351, 382, 561, 592, 802, 1125
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 388, 598, 808
BseBI CCWGG 4 cut(s) 142, 352, 562, 1001
BseDI CCNNGG 9 cut(s) 25, 141, 172, 351, 382, 561, 592, 802, 1125
BseGI GGATG 7 cut(s) 187, 397, 607, 817, 1033, 1074, 1078
BseLI CCNNNNNNNGG 4 cut(s) 178, 388, 598, 808
BseMII CTCAG 2 cut(s) 78, 117
BseRI GAGGAG 8 cut(s) 226, 305, 436, 515, 646, 725, 856, 935
BseXI GCAGC 7 cut(s) 136, 216, 346, 556, 636, 766, 846
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 1021
BsiHKCI CYCGRG 4 cut(s) 287, 497, 707, 917
BslFI GGGAC 4 cut(s) 240, 450, 660, 870
BslI CCNNNNNNNGG 4 cut(s) 178, 388, 598, 808
BsmAI GTCTC 2 cut(s) 288, 918
BsmFI GGGAC 4 cut(s) 240, 450, 660, 870
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 4 cut(s) 287, 497, 707, 917
Bsp1286I GDGCHC 1 cut(s) 1021
Bsp143I GATC 5 cut(s) 19, 52, 955, 1111, 1198
Bsp1720I GCTNAGC 1 cut(s) 103
BspACI CCGC 8 cut(s) 228, 231, 438, 441, 648, 651, 858, 861
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 79, 116
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 1 cut(s) 1123
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 1220
BssECI CCNNGG 9 cut(s) 25, 141, 172, 351, 382, 561, 592, 802, 1125
BssMI GATC 5 cut(s) 19, 52, 955, 1111, 1198
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 4 cut(s) 142, 352, 562, 1001
Bst4CI ACNGT 1 cut(s) 1196
BstAFI CTTAAG 1 cut(s) 1220
BstAPI GCANNNNNTGC 5 cut(s) 36, 130, 340, 550, 760
BstC8I GCNNGC 2 cut(s) 96, 100
BstDEI CTNAG 6 cut(s) 87, 103, 191, 401, 611, 821
BstDSI CCRYGG 4 cut(s) 172, 382, 592, 802
BstF5I GGATG 7 cut(s) 187, 397, 607, 817, 1033, 1074, 1078
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 22, 55, 958, 1114, 1201
BstMAI GTCTC 2 cut(s) 288, 918
BstMBI GATC 5 cut(s) 19, 52, 955, 1111, 1198
BstMWI GCNNNNNNNGC 6 cut(s) 36, 104, 130, 340, 550, 760
BstNI CCWGG 4 cut(s) 142, 352, 562, 1001
BstNSI RCATGY 4 cut(s) 167, 377, 587, 797
BstSCI CCNGG 4 cut(s) 140, 350, 560, 999
BstV1I GCAGC 7 cut(s) 136, 216, 346, 556, 636, 766, 846
BstV2I GAAGAC 4 cut(s) 282, 492, 702, 912
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 4 cut(s) 172, 382, 592, 802
BtsCI GGATG 7 cut(s) 187, 397, 607, 817, 1033, 1074, 1078
BtsI GCAGTG 5 cut(s) 306, 516, 726, 936, 1159
BtsIMutI CAGTG 6 cut(s) 306, 516, 726, 936, 1159, 1241
Cac8I GCNNGC 2 cut(s) 96, 100
CaiI CAGNNNCTG 5 cut(s) 130, 340, 550, 760, 1139
CciI TCATGA 1 cut(s) 988
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 4 cut(s) 149, 359, 569, 779
CviQI GTAC 4 cut(s) 149, 359, 569, 779
DdeI CTNAG 6 cut(s) 87, 103, 191, 401, 611, 821
DpnI GATC 5 cut(s) 21, 54, 957, 1113, 1200
DpnII GATC 5 cut(s) 19, 52, 955, 1111, 1198
DraIII CACNNNGTG 4 cut(s) 178, 388, 598, 808
EaeI YGGCCR 1 cut(s) 58
EciI GGCGGA 4 cut(s) 217, 427, 637, 847
Eco130I CCWWGG 1 cut(s) 25
Eco88I CYCGRG 4 cut(s) 287, 497, 707, 917
EcoRII CCWGG 4 cut(s) 140, 350, 560, 999
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaqI GGGAC 4 cut(s) 240, 450, 660, 870
FbaI TGATCA 1 cut(s) 1198
FokI GGATG 7 cut(s) 194, 404, 614, 824, 1040, 1081, 1085
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 6
GsuI CTGGAG 2 cut(s) 129, 983
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 5 cut(s) 307, 517, 727, 937, 992
HphI GGTGA 4 cut(s) 130, 340, 550, 1141
Hpy166II GTNNAC 2 cut(s) 802, 1085
Hpy188I TCNGA 2 cut(s) 1126, 1210
Hpy8I GTNNAC 2 cut(s) 802, 1085
HpyAV CCTTC 1 cut(s) 1059
HpyCH4III ACNGT 1 cut(s) 1196
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 4 cut(s) 124, 334, 544, 754
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 104, 130, 340, 550, 760
HpyF3I CTNAG 6 cut(s) 87, 103, 191, 401, 611, 821
HpySE526I ACGT 1 cut(s) 75
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 5 cut(s) 19, 52, 955, 1111, 1198
Lsp1109I GCAGC 7 cut(s) 136, 216, 346, 556, 636, 766, 846
LweI GCATC 5 cut(s) 382, 592, 802, 1063, 1126
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 1129
MalI GATC 5 cut(s) 21, 54, 957, 1113, 1200
MboI GATC 5 cut(s) 19, 52, 955, 1111, 1198
MboII GAAGA 8 cut(s) 125, 287, 335, 497, 707, 755, 917, 965
MfeI CAATTG 1 cut(s) 962
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 1021
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 6 cut(s) 263, 473, 683, 893, 962, 1189
MluNI TGGCCA 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 1046
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 3 cut(s) 243, 1181, 1221
Msp20I TGGCCA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 1220
MspR9I CCNGG 4 cut(s) 142, 352, 562, 1001
MunI CAATTG 1 cut(s) 962
MvaI CCWGG 4 cut(s) 142, 352, 562, 1001
MwoI GCNNNNNNNGC 6 cut(s) 36, 104, 130, 340, 550, 760
NdeII GATC 5 cut(s) 19, 52, 955, 1111, 1198
NheI GCTAGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 1123
NmuCI GTSAC 1 cut(s) 1129
NspI RCATGY 4 cut(s) 167, 377, 587, 797
PaeR7I CTCGAG 4 cut(s) 287, 497, 707, 917
PagI TCATGA 1 cut(s) 988
PfeI GAWTC 5 cut(s) 307, 517, 727, 937, 992
PflMI CCANNNNNTGG 4 cut(s) 178, 388, 598, 808
Psp6I CCWGG 4 cut(s) 140, 350, 560, 999
PspGI CCWGG 4 cut(s) 140, 350, 560, 999
PspN4I GGNNCC 1 cut(s) 1123
PstNI CAGNNNCTG 5 cut(s) 130, 340, 550, 760, 1139
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 4 cut(s) 150, 360, 570, 780
RsaNI GTAC 4 cut(s) 149, 359, 569, 779
SaqAI TTAA 3 cut(s) 243, 1181, 1221
Sau3AI GATC 5 cut(s) 19, 52, 955, 1111, 1198
ScrFI CCNGG 4 cut(s) 142, 352, 562, 1001
SduI GDGCHC 1 cut(s) 1021
SfaNI GCATC 5 cut(s) 382, 592, 802, 1063, 1126
Sfr274I CTCGAG 4 cut(s) 287, 497, 707, 917
SlaI CTCGAG 4 cut(s) 287, 497, 707, 917
SmlI CTYRAG 6 cut(s) 287, 497, 707, 917, 1022, 1220
SmoI CTYRAG 6 cut(s) 287, 497, 707, 917, 1022, 1220
Sse9I AATT 6 cut(s) 263, 473, 683, 893, 962, 1189
SsiI CCGC 8 cut(s) 228, 231, 438, 441, 648, 651, 858, 861
SspI AATATT 4 cut(s) 211, 421, 631, 841
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 4 cut(s) 140, 350, 560, 999
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 1196
TaiI ACGT 1 cut(s) 78
TaqI TCGA 6 cut(s) 18, 288, 498, 708, 918, 1166
TasI AATT 6 cut(s) 263, 473, 683, 893, 962, 1189
TauI GCSGC 4 cut(s) 233, 443, 653, 863
TfiI GAWTC 5 cut(s) 307, 517, 727, 937, 992
Tru1I TTAA 3 cut(s) 243, 1181, 1221
Tru9I TTAA 3 cut(s) 243, 1181, 1221
TscAI CASTG 6 cut(s) 306, 516, 726, 936, 1166, 1241
TseFI GTSAC 1 cut(s) 1129
TseI GCWGC 7 cut(s) 124, 204, 334, 544, 624, 754, 834
Tsp45I GTSAC 1 cut(s) 1129
TspDTI ATGAA 1 cut(s) 1083
TspGWI ACGGA 4 cut(s) 189, 399, 609, 819
TspRI CASTG 6 cut(s) 306, 516, 726, 936, 1166, 1241
Van91I CCANNNNNTGG 4 cut(s) 178, 388, 598, 808
Vha464I CTTAAG 1 cut(s) 1220
XapI RAATTY 4 cut(s) 263, 473, 683, 893
XceI RCATGY 4 cut(s) 167, 377, 587, 797
XhoI CTCGAG 4 cut(s) 287, 497, 707, 917
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.