Rh2CG167600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0026230
Physical Location & Seq
Reverse (-)
14991293 .. 14994094
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG167600.1

Sequence Viewer

Length: 660 bp
ATGTCCTCCATGGAATGGATGCTTTTCTTAGATGGTATCGCAACAATATTCGTATCATGTCCTCCGCTGCCTCCTCTTTCAATCCAAAATGTCCCAACAAATTTCAAGTTGAAGACCTCTCTCTCTCGAGGAGATAGCAGTGAGGAACTGAGGATTCAAGATTATATAGAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGCTTTTCTTAGATGGTATCGCAGCAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAACAAATTTCAAGTTGAAGATCTCTCTCTCAAGGAGATAGCGATGAGGATTCAAGATTATATAGAAGATACAATGCAGCCTCTGCCTCTCACCTGGGAAGTACCAAATAGAGAGCATGTCCTCCACGGAGTGGATGCTTTTCTTAGATGGTATCGCAGCAATATTCGTATCATGTCCTCCGCCGCCTCCTCTTTCAATCCAGAATGTCCCAACAAATTTCAAGTTGAAGACCTCTCTCTCAAGGAGATAGCGATGAGGATTCAAGATTATATAGAAGCTGCTCGAGTCTCAACGTGTTTGCCTCTGACAGAGGTTATGTGGGAGGTGTCCTCACTTTTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.23

Weight (kDa)

4.88

Isoelectric Point (pI)

65.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026230)

Species Orthologous Gene IDs
rosa_samantha Rh2BG167300 Rh2CG167600 Rh2DG166200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 15, 235, 445
AciI CCGC 5 cut(s) 65, 285, 288, 495, 498
AcsI RAATTY 3 cut(s) 100, 320, 530
AdeI CACNNNGTG 2 cut(s) 235, 445
AfaI GTAC 2 cut(s) 207, 417
AfiI CCNNNNNNNGG 3 cut(s) 15, 235, 445
AflIII ACRYGT 1 cut(s) 608
AjnI CCWGG 2 cut(s) 197, 407
AluBI AGCT 1 cut(s) 593
AluI AGCT 1 cut(s) 593
Alw26I GTCTC 1 cut(s) 607
AlwNI CAGNNNCTG 2 cut(s) 187, 397
Ama87I CYCGRG 2 cut(s) 126, 597
ApeKI GCWGC 6 cut(s) 67, 181, 261, 391, 471, 593
ApoI RAATTY 3 cut(s) 100, 320, 530
AsuHPI GGTGA 2 cut(s) 187, 397
AvaI CYCGRG 2 cut(s) 126, 597
BbsI GAAGAC 2 cut(s) 119, 549
BbvI GCAGC 6 cut(s) 54, 193, 273, 403, 483, 580
BccI CCATC 3 cut(s) 26, 246, 456
BciT130I CCWGG 2 cut(s) 199, 409
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 1 cut(s) 658
BglII AGATCT 1 cut(s) 334
BisI GCNGC 8 cut(s) 68, 182, 262, 288, 392, 472, 498, 594
BlsI GCNGC 8 cut(s) 69, 183, 263, 289, 393, 473, 499, 595
Bme1390I CCNGG 2 cut(s) 199, 409
BmeT110I CYCGRG 2 cut(s) 126, 597
BmrFI CCNGG 2 cut(s) 199, 409
BmsI GCATC 3 cut(s) 9, 229, 439
BpiI GAAGAC 2 cut(s) 119, 549
BplI GAGNNNNNCTC 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 329, 539
BsaJI CCNNGG 5 cut(s) 9, 198, 229, 408, 439
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 235, 445
BseBI CCWGG 2 cut(s) 199, 409
BseDI CCNNGG 5 cut(s) 9, 198, 229, 408, 439
BseGI GGATG 3 cut(s) 24, 244, 454
BseLI CCNNNNNNNGG 3 cut(s) 15, 235, 445
BseMII CTCAG 1 cut(s) 140
BseRI GAGGAG 4 cut(s) 63, 144, 283, 493
BseXI GCAGC 6 cut(s) 54, 193, 273, 403, 483, 580
BsiHKCI CYCGRG 2 cut(s) 126, 597
BslFI GGGAC 3 cut(s) 77, 297, 507
BslI CCNNNNNNNGG 3 cut(s) 15, 235, 445
BsmAI GTCTC 1 cut(s) 607
BsmFI GGGAC 3 cut(s) 77, 297, 507
BsoBI CYCGRG 2 cut(s) 126, 597
Bsp143I GATC 1 cut(s) 334
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 5 cut(s) 65, 285, 288, 495, 498
BspCNI CTCAG 1 cut(s) 141
BssECI CCNNGG 5 cut(s) 9, 198, 229, 408, 439
BssMI GATC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 199, 409
BstAPI GCANNNNNTGC 2 cut(s) 187, 397
BstDEI CTNAG 4 cut(s) 28, 149, 248, 458
BstDSI CCRYGG 3 cut(s) 9, 229, 439
BstF5I GGATG 3 cut(s) 24, 244, 454
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 187, 397
BstNI CCWGG 2 cut(s) 199, 409
BstNSI RCATGY 2 cut(s) 224, 434
BstSCI CCNGG 2 cut(s) 197, 407
BstV1I GCAGC 6 cut(s) 54, 193, 273, 403, 483, 580
BstV2I GAAGAC 2 cut(s) 119, 549
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BtgI CCRYGG 3 cut(s) 9, 229, 439
BtgZI GCGATG 2 cut(s) 371, 581
BtsCI GGATG 3 cut(s) 24, 244, 454
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
CaiI CAGNNNCTG 2 cut(s) 187, 397
Csp6I GTAC 2 cut(s) 206, 416
CviAII CATG 6 cut(s) 10, 57, 221, 277, 431, 487
CviJI RGCY 4 cut(s) 184, 394, 593, 657
CviKI_1 RGCY 4 cut(s) 184, 394, 593, 657
CviQI GTAC 2 cut(s) 206, 416
DdeI CTNAG 4 cut(s) 28, 149, 248, 458
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraIII CACNNNGTG 2 cut(s) 235, 445
EciI GGCGGA 2 cut(s) 274, 484
Eco130I CCWWGG 1 cut(s) 9
Eco88I CYCGRG 2 cut(s) 126, 597
EcoRII CCWGG 2 cut(s) 197, 407
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 6 cut(s) 13, 60, 224, 280, 434, 490
FaqI GGGAC 3 cut(s) 77, 297, 507
FatI CATG 6 cut(s) 9, 56, 220, 276, 430, 486
Fnu4HI GCNGC 8 cut(s) 68, 182, 262, 288, 392, 472, 498, 594
FokI GGATG 3 cut(s) 31, 251, 461
Fsp4HI GCNGC 8 cut(s) 68, 182, 262, 288, 392, 472, 498, 594
FspBI CTAG 1 cut(s) 658
GluI GCNGC 8 cut(s) 68, 182, 262, 288, 392, 472, 498, 594
Hin1II CATG 6 cut(s) 13, 60, 224, 280, 434, 490
HinfI GANTC 4 cut(s) 154, 364, 574, 600
HphI GGTGA 2 cut(s) 187, 397
Hpy188I TCNGA 1 cut(s) 621
Hpy188III TCNNGA 6 cut(s) 126, 158, 305, 368, 515, 578
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 2 cut(s) 181, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 397
HpyF3I CTNAG 4 cut(s) 28, 149, 248, 458
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 6 cut(s) 13, 60, 224, 280, 434, 490
Kzo9I GATC 1 cut(s) 334
LpnPI CCDG 6 cut(s) 184, 211, 318, 394, 421, 528
Lsp1109I GCAGC 6 cut(s) 54, 193, 273, 403, 483, 580
LweI GCATC 3 cut(s) 9, 229, 439
MaeI CTAG 1 cut(s) 658
MaeII ACGT 1 cut(s) 608
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 5 cut(s) 124, 182, 344, 392, 554
MflI RGATCY 1 cut(s) 334
MluCI AATT 3 cut(s) 100, 320, 530
MlyI GAGTC 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 199, 409
MvaI CCWGG 2 cut(s) 199, 409
MwoI GCNNNNNNNGC 2 cut(s) 187, 397
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 334
NlaIII CATG 6 cut(s) 13, 60, 224, 280, 434, 490
NspI RCATGY 2 cut(s) 224, 434
PaeR7I CTCGAG 2 cut(s) 126, 597
PfeI GAWTC 3 cut(s) 154, 364, 574
PflMI CCANNNNNTGG 3 cut(s) 15, 235, 445
PkrI GCNGC 8 cut(s) 69, 183, 263, 289, 393, 473, 499, 595
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
Psp6I CCWGG 2 cut(s) 197, 407
PspGI CCWGG 2 cut(s) 197, 407
PspXI VCTCGAGB 1 cut(s) 597
PstNI CAGNNNCTG 2 cut(s) 187, 397
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 207, 417
RsaNI GTAC 2 cut(s) 206, 416
SatI GCNGC 8 cut(s) 68, 182, 262, 288, 392, 472, 498, 594
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 2 cut(s) 199, 409
SetI ASST 8 cut(s) 119, 200, 410, 549, 595, 611, 630, 642
SfaNI GCATC 3 cut(s) 9, 229, 439
Sfr274I CTCGAG 2 cut(s) 126, 597
SlaI CTCGAG 2 cut(s) 126, 597
SmlI CTYRAG 4 cut(s) 126, 344, 554, 597
SmoI CTYRAG 4 cut(s) 126, 344, 554, 597
Sse9I AATT 3 cut(s) 100, 320, 530
SsiI CCGC 5 cut(s) 65, 285, 288, 495, 498
SspI AATATT 3 cut(s) 48, 268, 478
SspMI CTAG 1 cut(s) 658
StyD4I CCNGG 2 cut(s) 197, 407
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 611
TaqI TCGA 2 cut(s) 127, 598
TasI AATT 3 cut(s) 100, 320, 530
TauI GCSGC 2 cut(s) 290, 500
TfiI GAWTC 3 cut(s) 154, 364, 574
TscAI CASTG 1 cut(s) 145
TseI GCWGC 6 cut(s) 67, 181, 261, 391, 471, 593
TspGWI ACGGA 2 cut(s) 246, 456
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 3 cut(s) 15, 235, 445
XapI RAATTY 3 cut(s) 100, 320, 530
XceI RCATGY 2 cut(s) 224, 434
XhoI CTCGAG 2 cut(s) 126, 597
XspI CTAG 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.