Rh2BG456900

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019366
Physical Location & Seq
Forward (+)
64703510 .. 64719627
16118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG456900.1

Sequence Viewer

Length: 294 bp
ATGGTTTGCATGATGCTGGGTTTCGCGTTTGACGGTGGTGATGGGAATTACTTGGCTGCAGCAACCATGGAAGCTAGCTATTCTCTTGGTGTGGTGGTTCCGGAGGTGGTGCTGAGGAGGCCGGTAACAGCCATGCCATTACATATGTTCCACATTATGACACCCTTGGAGCTAAGGATGAAGCCGTGTTATGTAGTTTTTGTGGGTCTCTCAGCTGGTACTAAAGCTTGTATGTACAAAGTTTTTCAAGCTGTAAGTGTTTTGCTCAGTTCGATGGTTTTTGCTCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

97

Amino Acids

10.57

Weight (kDa)

7.73

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019366)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160941
rosa_roxburghii Rroxscaffold_4G00303790
rosa_rugosa Rorug04G0341000
rosa_samantha Rh2BG456900 Rh2DG466600 Rh4CG100300 Rh5BG327200 Rh5DG338300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AccIII TCCGGA 1 cut(s) 100
AfaI GTAC 2 cut(s) 220, 236
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 6 cut(s) 74, 78, 172, 215, 227, 251
AluI AGCT 6 cut(s) 74, 78, 172, 215, 227, 251
Alw26I GTCTC 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 56, 59
AsuHPI GGTGA 1 cut(s) 50
AsuNHI GCTAGC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 43, 71
BccI CCATC 2 cut(s) 35, 268
BceAI ACGGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 57, 60
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 2 cut(s) 58, 61
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 1 cut(s) 3
BmtI GCTAGC 1 cut(s) 78
Bpu10I CCTNAGC 2 cut(s) 113, 173
Bpu1102I GCTNAGC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 66, 165
BsaWI WCCGGW 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 121
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 66, 165
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 104, 225, 280
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 43, 71
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 2 cut(s) 101, 122
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 234
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 66
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 3 cut(s) 105, 224, 279
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 61
BspOI GCTAGC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 234
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 66, 165
BssT1I CCWWGG 2 cut(s) 66, 165
Bst4CI ACNGT 1 cut(s) 35
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 5 cut(s) 113, 173, 211, 266, 285
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 43, 71
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 121
Csp6I GTAC 2 cut(s) 219, 235
CviAII CATG 3 cut(s) 10, 67, 133
CviQI GTAC 2 cut(s) 219, 235
DdeI CTNAG 5 cut(s) 113, 173, 211, 266, 285
Eco130I CCWWGG 2 cut(s) 66, 165
Eco31I GGTCTC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 66, 165
ErhI CCWWGG 2 cut(s) 66, 165
FaeI CATG 3 cut(s) 13, 70, 136
FaiI YATR 8 cut(s) 11, 68, 134, 144, 146, 158, 192, 233
FatI CATG 3 cut(s) 9, 66, 132
FauNDI CATATG 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 1 cut(s) 75
GluI GCNGC 2 cut(s) 57, 60
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 121
HapII CCGG 2 cut(s) 101, 122
Hin1II CATG 3 cut(s) 13, 70, 136
HindIII AAGCTT 1 cut(s) 225
HpaII CCGG 2 cut(s) 101, 122
HphI GGTGA 1 cut(s) 50
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 9, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 5 cut(s) 113, 173, 211, 266, 285
Hsp92II CATG 3 cut(s) 13, 70, 136
Kpn2I TCCGGA 1 cut(s) 100
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 2, 114, 135, 201
Lsp1109I GCAGC 2 cut(s) 43, 71
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 124
MluCI AATT 1 cut(s) 46
MnlI CCTC 3 cut(s) 97, 108, 111
MroI TCCGGA 1 cut(s) 100
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 101, 122
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 118
NcoI CCATGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 144
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 3 cut(s) 13, 70, 136
NlaIV GGNNCC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 58, 61
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 2 cut(s) 220, 236
RsaNI GTAC 2 cut(s) 219, 235
SatI GCNGC 2 cut(s) 57, 60
SetI ASST 7 cut(s) 76, 80, 108, 174, 217, 229, 253
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 57
Sse9I AATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 75
StyI CCWWGG 2 cut(s) 66, 165
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 272
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 234
TseI GCWGC 2 cut(s) 56, 59
TspDTI ATGAA 1 cut(s) 194
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.