Rh5DG338300

Eukaryotic protein of unknown function (DUF829)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019366
Physical Location & Seq
Forward (+)
45526371 .. 45547275
20905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG338300.1

Sequence Viewer

Length: 192 bp
ATGATAGTTCTGGTCATTGGCCAAGATTCAAATCCCGAGCTAAGGATGAAGCCGTGTTATGTAGTTTTTGTGGGTCTCTCAGCTGGTACTAAAGCTTGTATGTACAAAGTTTTTCAACCTAGACAAACCAGGTTGAAGAACGGAATGCGCACAGCCACCGGTGAGATGTGCTTGCCATGGCCGCCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF829

Protein Analysis

63

Amino Acids

7.08

Weight (kDa)

9.3

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019366)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0160941
rosa_roxburghii Rroxscaffold_4G00303790
rosa_rugosa Rorug04G0341000
rosa_samantha Rh2BG456900 Rh2DG466600 Rh4CG100300 Rh5BG327200 Rh5DG338300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 149
AciI CCGC 1 cut(s) 182
AcoI YGGCCR 2 cut(s) 19, 179
AfaI GTAC 2 cut(s) 88, 104
AfiI CCNNNNNNNGG 1 cut(s) 42
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 3 cut(s) 30, 116, 136
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 3 cut(s) 40, 83, 95
AluI AGCT 3 cut(s) 40, 83, 95
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 2 cut(s) 19, 179
AsiGI ACCGGT 1 cut(s) 158
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 35
BalI TGGCCA 1 cut(s) 21
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 93
BshFI GGCC 2 cut(s) 21, 181
BshTI ACCGGT 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 2 cut(s) 159, 185
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 2 cut(s) 21, 181
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 1 cut(s) 182
BspANI GGCC 2 cut(s) 21, 181
BspCNI CTCAG 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 130
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 41, 79
BstDSI CCRYGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BsuRI GGCC 2 cut(s) 21, 181
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 128
Csp6I GTAC 2 cut(s) 87, 103
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 1 cut(s) 177
CviJI RGCY 7 cut(s) 21, 40, 52, 83, 95, 155, 181
CviKI_1 RGCY 7 cut(s) 21, 40, 52, 83, 95, 155, 181
CviQI GTAC 2 cut(s) 87, 103
DdeI CTNAG 2 cut(s) 41, 79
EaeI YGGCCR 2 cut(s) 19, 179
Eco130I CCWWGG 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 180
FaiI YATR 3 cut(s) 60, 101, 178
FatI CATG 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 182
FspAI RTGCGCAY 1 cut(s) 149
FspBI CTAG 1 cut(s) 120
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 2 cut(s) 21, 181
HapII CCGG 2 cut(s) 159, 185
HhaI GCGC 1 cut(s) 150
Hin1II CATG 1 cut(s) 180
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 1 cut(s) 26
HpaII CCGG 2 cut(s) 159, 185
HphI GGTGA 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 41, 79
Hsp92II CATG 1 cut(s) 180
HspAI GCGC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 69, 115, 142, 172
MabI ACCWGGT 1 cut(s) 128
MaeI CTAG 1 cut(s) 120
MboII GAAGA 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 21
Mox20I TGGCCA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 159, 185
MspR9I CCNGG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 176
NlaIII CATG 1 cut(s) 180
NsbI TGCGCA 1 cut(s) 149
PctI GAATGC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 26
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 88, 104
RsaNI GTAC 2 cut(s) 87, 103
SatI GCNGC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 130
SetI ASST 5 cut(s) 42, 85, 97, 121, 134
SexAI ACCWGGT 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 158
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 176
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 156
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.