Rh2BG576500
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
79277461 .. 79278002
542 bp
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UTR
Exon/CDS
Intron
Rh2BG576500.1

Sequence Viewer

Length: 408 bp
ATGGCTTGCGCCGCTAAAATCACAATAAAAGCGATACTAGTGGGATATAAGGGTGGGTTTGATAACGTGGCGACACTGGTGGATGTTGGTGGTGGGACTGGAGGCGCAGTGGCGGAGATTATGAAGTTGTATCCCAGCATTAAGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGTGGATTATGCACCACTGGAGCGACAGTGATTGCGTCAAGATATTGAAGAATTGTCGAAAGGCAATACTGGAGAGCAGTGGCAAGGTGATTATTTTGGACGTTGTTCTAAAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGACAAAGGACAATGGTGATGGCCCTATATTTTCAATAGAAAATCTGAAAAGAAGAATTTTCTTTTATTATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

14.63

Weight (kDa)

7.7

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 5 - 62 1.6e-15 O-methyltransferase domain
Methyltransf_2 PF00891 63 - 108 1.2e-08 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024801)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0162451
rosa_rugosa Rorug02G0498000
rosa_samantha Rh2BG576500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 113
AcsI RAATTY 1 cut(s) 387
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 232, 366
AhlI ACTAGT 1 cut(s) 37
AoxI GGCC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 3 cut(s) 11, 107, 184
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 283, 317, 359
BccI CCATC 2 cut(s) 302, 344
BceAI ACGGC 1 cut(s) 169
BciVI GTATCC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 185
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 353
BmsI GCATC 1 cut(s) 156
BpmI CTGGAG 3 cut(s) 120, 223, 275
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 196, 226
Bse1I ACTGG 4 cut(s) 81, 103, 206, 258
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 88
BseNI ACTGG 4 cut(s) 81, 103, 206, 258
BseYI CCCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 12, 113
BspANI GGCC 1 cut(s) 354
BsrI ACTGG 4 cut(s) 81, 103, 206, 258
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 7
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 3 cut(s) 11, 107, 184
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 11, 144
BstNSI RCATGY 2 cut(s) 170, 316
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 2 cut(s) 114, 268
BtsIMutI CAGTG 5 cut(s) 74, 114, 199, 217, 268
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 3 cut(s) 11, 107, 184
Cfr13I GGNCC 1 cut(s) 353
CseI GACGC 1 cut(s) 208
CviAII CATG 2 cut(s) 167, 313
CviJI RGCY 4 cut(s) 5, 298, 330, 354
CviKI_1 RGCY 4 cut(s) 5, 298, 330, 354
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 128
FaeI CATG 2 cut(s) 170, 316
FaiI YATR 8 cut(s) 48, 122, 168, 194, 314, 359, 402, 404
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 166, 312
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 38
GlaI GCGC 3 cut(s) 10, 106, 183
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 138
GsuI CTGGAG 3 cut(s) 120, 223, 275
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 354
HgaI GACGC 1 cut(s) 208
HhaI GCGC 3 cut(s) 11, 107, 184
Hin1II CATG 2 cut(s) 170, 316
Hin6I GCGC 3 cut(s) 9, 105, 182
HinP1I GCGC 3 cut(s) 9, 105, 182
HphI GGTGA 3 cut(s) 283, 317, 359
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 2 cut(s) 66, 285
HpyCH4V TGCA 2 cut(s) 176, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 144
HpySE526I ACGT 2 cut(s) 66, 285
Hsp92II CATG 2 cut(s) 170, 316
HspAI GCGC 3 cut(s) 9, 105, 182
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 6 cut(s) 62, 84, 148, 187, 239, 312
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 38
MaeII ACGT 2 cut(s) 66, 285
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 244, 396
MluCI AATT 2 cut(s) 235, 387
MnlI CCTC 1 cut(s) 95
MseI TTAA 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 11, 144
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 170, 316
NspI RCATGY 2 cut(s) 170, 316
PciI ACATGT 1 cut(s) 166
PkrI GCNGC 1 cut(s) 13
PscI ACATGT 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 353
SetI ASST 3 cut(s) 69, 273, 288
SfaNI GCATC 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 2 cut(s) 235, 387
SsiI CCGC 2 cut(s) 12, 113
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 2 cut(s) 69, 288
TaqI TCGA 2 cut(s) 241, 318
TasI AATT 2 cut(s) 235, 387
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 5 cut(s) 81, 114, 206, 217, 268
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 5 cut(s) 81, 114, 206, 217, 268
XapI RAATTY 1 cut(s) 387
XceI RCATGY 2 cut(s) 170, 316
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.