Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

63102404 .. 63106368

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0498000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGATGAGCATCGTGCTCCGGAGGTCACCCACAATATCCGCGACGCGGGCCGTCGCCGCCATCGAAACCCTACTGATCAACCGCCTCTCATTTCCCGCCACGTCATCTCCCGCACTTCCGGGAAATGGTGATCTCGGCGGCGGTGAGGCTAAGCCAGGGTTTCAAGTTCGGGACTTTCACGTTAAATCTGGGCCGTTGAATTTCCGGGCATCGCCAACGACTTTGTTCGGCGCCCAGGTGGCTTTGGACGACGACTACGACGAGTCGTCTAAATCAAGCGGCGAAGATGGGCTCGAGATTTCGAGGCTAGGGATTGATAAGGAGATTGTGTCTGCTTTGGCCAAGAAGGGTATCACTAAACTCTTCCCCATTCAGAGAGCTGTGTTGGAACCAGCAATGCAAGGGCGTGATATGATTGGTCGTGCTAGAACTGGAACTGGGAAAACTCTTGCATTTGGCATTCCCATATTGGATAAAATTATTCGATTCAATGCCAAACACGGGCGTGGGAGGAATCCTTTGGCCTTGGTTATGGCTCCGACAAGAGAGCTCGCGAAGCAGGTTGACAAGGAGTTCCACGAGGCAGCACCTAGCTTGGATACTATTTGTGTGTATGGTGGTACGCCCATTGGAAATCAAATCAGGCAGCTTGCCCATGGTACTGATGTGGCTGTGGGCACACCGGGGCGTATTATTGATCTAATCGGTAGGGGTGCTTTGAGTTTATCTGAAGTTCAGTTCATTGTTCTTGATGAAGCCGATGAGATGCTTAAAGTGGGATTTCAGGAGGCTGTTGAGACAACCTTAAAGAGCTTGCCAAAGAAACGTCAGACCCTGATGTTCTCTGCAACAATGCCGCCTTTCATTAGAAGTCTTACTCAGAAGTACCTAAATAATCCAGCAGTTATTGATCTTGTTGGGGACAATGATCAGAAATTAGCAGATGGAATTTCCCTGTATTCTATTGCTGCGGAATCATATGGAAAAGCATCGATCCTTGGACCACTTATAACAGAACATGCAAAAGGAGGGAAGTGCATTATTTTTACTCAGAGAAAACGTGATGCAGATAATTTGGCATATGCCCTGTCAAGAAGCCATAAATGTGAGGCTTTGCACGGCGATATTTCACAACAGCAGAGGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATCTGGTGATACACTATGAGCTTCCAAACAATTCAGAGATATTTGTTCATCGGTCAGGGAGAACAGGTCGTGCTGGGAAGAAAGGAAGTGCTATTCTGATTTACTCACAAAATCAGGCCAGGAACGTCCAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCCCCCCCGGATTGCTGTTGATAGCAGCAGTGCAAGCATGTTCTCTGACAGAGGTAGTAGCGGTGGTCATTTTGGTGGTTCCGGGGGATCTGGATATGGTCGTCCAGCAAACCGAGGTGGAAACTTTGGTAATTCAGGTTTTGGCCGTTCTGGTGGTTTTGGTGGTTCTGACCGTTCCAGTGGTTTTGGAGGGTTTGGTGGTTCAGACCGTTCAAGCGGTTTTGGTGGGTCAGACCGTTCAAGTGGTTTTGGAGGGTTTGGTAGTTCTGATCGTTCAAGTGGCCGTTCAGGTGGTTTCGGAGATCGTTCCGGTGGTTCTAGGGGCTTTGGTGGGAATAATTCTAGCCGGTTTGGAAGCTTTGGGAAAGACAGTGGTTTCACAGGGTTTGGAAATTCTGATCGTTCAAGTGGTTCGGGAGGGTTTGGTAGTTCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

613

Amino Acids

64.61

Weight (kDa)

9.52

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	123 - 288	7e-45	DEAD/DEAH box helicase
Helicase_C	PF00271	329 - 437	9.7e-33	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
Acc36I	ACCTGC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	4 cut(s)	41, 46, 554, 1377
AccIII	TCCGGA	1 cut(s)	18
AclWI	GGATC	2 cut(s)	988, 1495
AcoI	YGGCCR	3 cut(s)	339, 1543, 1681
AcsI	RAATTY	3 cut(s)	199, 948, 1792
AcuI	CTGAAG	1 cut(s)	750
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	4 cut(s)	622, 661, 887, 1224
AfiI	CCNNNNNNNGG	3 cut(s)	45, 125, 501
AgsI	TTSAA	8 cut(s)	164, 199, 490, 1373, 1614, 1641, 1677, 1806
AhdI	GACNNNNNGTC	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	154, 234, 1352
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	7 cut(s)	380, 550, 594, 649, 813, 1255, 1758
AluI	AGCT	7 cut(s)	380, 550, 594, 649, 813, 1255, 1758
Alw21I	GWGCWC	2 cut(s)	18, 552
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	2 cut(s)	988, 1495
AlwNI	CAGNNNCTG	1 cut(s)	835
Ama87I	CYCGRG	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	7 cut(s)	48, 191, 339, 522, 1350, 1543, 1681
ApeKI	GCWGC	5 cut(s)	584, 646, 968, 1205, 1425
ApoI	RAATTY	3 cut(s)	199, 948, 1792
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	48, 191, 1001
AsuC2I	CCSGG	5 cut(s)	120, 206, 684, 1408, 1483
AsuHPI	GGTGA	4 cut(s)	18, 140, 155, 1252
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	1001
BaeGI	GKGCMC	2 cut(s)	680, 1153
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	3 cut(s)	294, 552, 1404
BauI	CACGAG	2 cut(s)	578, 1209
Bbv12I	GWGCWC	2 cut(s)	18, 552
BbvI	GCAGC	5 cut(s)	596, 658, 955, 1192, 1437
BccI	CCATC	4 cut(s)	68, 281, 938, 1163
BceAI	ACGGC	5 cut(s)	35, 178, 1135, 1530, 1668
BciT130I	CCWGG	3 cut(s)	156, 236, 1354
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	2 cut(s)	75, 928
BcnI	CCSGG	5 cut(s)	120, 206, 684, 1408, 1483
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	5 cut(s)	308, 426, 591, 1719, 1743
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	592
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	9 cut(s)	57, 139, 280, 585, 647, 857, 969, 1206, 1426
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	9 cut(s)	58, 140, 281, 586, 648, 858, 970, 1207, 1427
Bme1390I	CCNGG	8 cut(s)	120, 156, 206, 236, 684, 1354, 1408, 1483
Bme18I	GGWCC	1 cut(s)	1001
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	48, 191, 1001
BmiI	GGNNCC	4 cut(s)	232, 390, 537, 1480
BmrFI	CCNGG	8 cut(s)	120, 156, 206, 236, 684, 1354, 1408, 1483
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	6 cut(s)	18, 218, 756, 998, 1054, 1376
BmuI	ACTGGG	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuMI	CCSGG	5 cut(s)	120, 206, 684, 1408, 1483
Bsa29I	ATCGAT	1 cut(s)	992
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	9 cut(s)	155, 234, 525, 655, 683, 997, 1406, 1482, 1513
BsaWI	WCCGGW	2 cut(s)	18, 1709
BsaXI	ACNNNNNCTCC	6 cut(s)	91, 121, 314, 344, 1285, 1315
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 125, 501
Bse118I	RCCGGY	1 cut(s)	1746
Bse1I	ACTGG	3 cut(s)	436, 442, 1578
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	3 cut(s)	156, 236, 1354
BseCI	ATCGAT	1 cut(s)	992
BseDI	CCNNGG	9 cut(s)	155, 234, 525, 655, 683, 997, 1406, 1482, 1513
BseGI	GGATG	1 cut(s)	1391
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	3 cut(s)	45, 125, 501
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	893, 1064
BseNI	ACTGG	3 cut(s)	436, 442, 1578
BseSI	GKGCMC	2 cut(s)	680, 1153
BseXI	GCAGC	5 cut(s)	596, 658, 955, 1192, 1437
BseYI	CCCAGC	1 cut(s)	1307
Bsh1236I	CGCG	4 cut(s)	41, 46, 554, 1377
BshFI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1683
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	992
BsiHKAI	GWGCWC	2 cut(s)	18, 552
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	8 cut(s)	19, 119, 205, 683, 1408, 1482, 1710, 1747
BslFI	GGGAC	2 cut(s)	185, 935
BslI	CCNNNNNNNGG	3 cut(s)	45, 125, 501
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	185, 935
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1683
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	6 cut(s)	18, 294, 552, 680, 1153, 1404
Bsp13I	TCCGGA	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	655
Bsp68I	TCGCGA	1 cut(s)	554
BspANI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1683
BspCNI	CTCAG	2 cut(s)	892, 1063
BspDI	ATCGAT	1 cut(s)	992
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	4 cut(s)	41, 46, 554, 1377
BspLI	GGNNCC	4 cut(s)	232, 390, 537, 1480
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	2 cut(s)	988, 1495
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	1746
BsrI	ACTGG	3 cut(s)	436, 442, 1578
BssAI	RCCGGY	1 cut(s)	1746
BssECI	CCNNGG	9 cut(s)	155, 234, 525, 655, 683, 997, 1406, 1482, 1513
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	2 cut(s)	578, 1209
BssT1I	CCWWGG	3 cut(s)	525, 655, 997
Bst2BI	CACGAG	2 cut(s)	578, 1209
Bst2UI	CCWGG	3 cut(s)	156, 236, 1354
Bst4CI	ACNGT	4 cut(s)	1574, 1610, 1637, 1772
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	48, 552, 651, 815, 1435
BstDEI	CTNAG	3 cut(s)	150, 879, 1050
BstDSI	CCRYGG	1 cut(s)	655
BstEII	GGTNACC	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	1391
BstFNI	CGCG	4 cut(s)	41, 46, 554, 1377
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	791
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 56, 239, 556, 1434
BstNI	CCWGG	3 cut(s)	156, 236, 1354
BstNSI	RCATGY	2 cut(s)	1022, 1441
BstPI	GGTNACC	1 cut(s)	24
BstSCI	CCNGG	8 cut(s)	118, 154, 204, 234, 682, 1352, 1406, 1481
BstSLI	GKGCMC	2 cut(s)	680, 1153
BstUI	CGCG	4 cut(s)	41, 46, 554, 1377
BstV1I	GCAGC	5 cut(s)	596, 658, 955, 1192, 1437
BstX2I	RGATCY	1 cut(s)	1487
BstYI	RGATCY	1 cut(s)	1487
Bsu15I	ATCGAT	1 cut(s)	992
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1683
BsuTUI	ATCGAT	1 cut(s)	992
BtgI	CCRYGG	1 cut(s)	655
BtgZI	GCGATG	2 cut(s)	195, 1392
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	1391
BtsI	GCAGTG	1 cut(s)	1435
BtsIMutI	CAGTG	3 cut(s)	1435, 1585, 1777
BtuMI	TCGCGA	1 cut(s)	554
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	5 cut(s)	48, 552, 651, 815, 1435
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	1746
Cfr13I	GGNCC	3 cut(s)	48, 191, 1001
ClaI	ATCGAT	1 cut(s)	992
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	621, 660, 886, 1223
CviAII	CATG	3 cut(s)	656, 1019, 1438
CviQI	GTAC	4 cut(s)	621, 660, 886, 1223
DdeI	CTNAG	3 cut(s)	150, 879, 1050
DinI	GGCGCC	1 cut(s)	232
DriI	GACNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	3 cut(s)	339, 1543, 1681
Eam1104I	CTCTTC	1 cut(s)	368
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	3 cut(s)	525, 655, 997
Eco24I	GRGCYC	3 cut(s)	294, 552, 1404
Eco47I	GGWCC	1 cut(s)	1001
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	154, 234, 1352
EcoT14I	CCWWGG	3 cut(s)	525, 655, 997
EcoT38I	GRGCYC	3 cut(s)	294, 552, 1404
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	3 cut(s)	525, 655, 997
FaeI	CATG	3 cut(s)	659, 1022, 1441
FaqI	GGGAC	2 cut(s)	185, 935
FatI	CATG	3 cut(s)	655, 1018, 1437
FauI	CCCGC	3 cut(s)	39, 103, 118
FauNDI	CATATG	2 cut(s)	979, 1081
FbaI	TGATCA	2 cut(s)	75, 928
Fnu4HI	GCNGC	9 cut(s)	57, 139, 280, 585, 647, 857, 969, 1206, 1426
FokI	GGATG	1 cut(s)	1398
FriOI	GRGCYC	3 cut(s)	294, 552, 1404
Fsp4HI	GCNGC	9 cut(s)	57, 139, 280, 585, 647, 857, 969, 1206, 1426
FspBI	CTAG	5 cut(s)	308, 426, 591, 1719, 1743
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	9 cut(s)	57, 139, 280, 585, 647, 857, 969, 1206, 1426
GsaI	CCCAGC	1 cut(s)	1311
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1683
HapII	CCGG	8 cut(s)	19, 119, 205, 683, 1408, 1482, 1710, 1747
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	659, 1022, 1441
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	1756
HinfI	GANTC	6 cut(s)	263, 486, 514, 974, 1369, 1392
HpaII	CCGG	8 cut(s)	19, 119, 205, 683, 1408, 1482, 1710, 1747
HphI	GGTGA	4 cut(s)	18, 140, 155, 1252
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188III	TCNNGA	9 cut(s)	19, 170, 295, 553, 749, 785, 1092, 1491, 1815
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	4 cut(s)	46, 56, 254, 263
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	4 cut(s)	1574, 1610, 1637, 1772
HpyCH4IV	ACGT	5 cut(s)	101, 180, 826, 1060, 1359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 56, 239, 556, 1434
HpyF3I	CTNAG	3 cut(s)	150, 879, 1050
HpySE526I	ACGT	5 cut(s)	101, 180, 826, 1060, 1359
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	659, 1022, 1441
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	18
Ksp22I	TGATCA	2 cut(s)	75, 928
LmnI	GCTCC	2 cut(s)	21, 541
Lsp1109I	GCAGC	5 cut(s)	596, 658, 955, 1192, 1437
LweI	GCATC	6 cut(s)	18, 218, 756, 998, 1054, 1376
MaeI	CTAG	5 cut(s)	308, 426, 591, 1719, 1743
MaeII	ACGT	5 cut(s)	101, 180, 826, 1060, 1359
MaeIII	GTNAC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	296, 355, 1324
MflI	RGATCY	1 cut(s)	1487
MhlI	GDGCHC	6 cut(s)	18, 294, 552, 680, 1153, 1404
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	9 cut(s)	199, 477, 935, 948, 1072, 1264, 1531, 1738, 1792
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	366, 563
Mox20I	TGGCCA	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	183, 771, 806
MslI	CAYNNNNRTG	3 cut(s)	504, 1104, 1473
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	8 cut(s)	19, 119, 205, 683, 1408, 1482, 1710, 1747
MspR9I	CCNGG	8 cut(s)	120, 156, 206, 236, 684, 1354, 1408, 1483
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	3 cut(s)	156, 236, 1354
MvnI	CGCG	4 cut(s)	41, 46, 554, 1377
MwoI	GCNNNNNNNGC	5 cut(s)	47, 56, 239, 556, 1434
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	5 cut(s)	120, 206, 684, 1408, 1483
NcoI	CCATGG	1 cut(s)	655
NdeI	CATATG	2 cut(s)	979, 1081
NlaIII	CATG	3 cut(s)	659, 1022, 1441
NlaIV	GGNNCC	4 cut(s)	232, 390, 537, 1480
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	24
NruI	TCGCGA	1 cut(s)	554
NspI	RCATGY	2 cut(s)	1022, 1441
OliI	CACNNNNGTG	1 cut(s)	504
PaeR7I	CTCGAG	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 255, 258
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	486, 514, 974, 1369, 1392
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	9 cut(s)	58, 140, 281, 586, 648, 858, 970, 1207, 1427
PleI	GAGTC	1 cut(s)	271
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	1010
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	3 cut(s)	154, 234, 1352
PspEI	GGTNACC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	3 cut(s)	154, 234, 1352
PspN4I	GGNNCC	4 cut(s)	232, 390, 537, 1480
PspPI	GGNCC	3 cut(s)	48, 191, 1001
PstNI	CAGNNNCTG	1 cut(s)	835
PsuI	RGATCY	1 cut(s)	1487
RruI	TCGCGA	1 cut(s)	554
RsaI	GTAC	4 cut(s)	622, 661, 887, 1224
RsaNI	GTAC	4 cut(s)	621, 660, 886, 1223
RseI	CAYNNNNRTG	3 cut(s)	504, 1104, 1473
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	183, 771, 806
SatI	GCNGC	9 cut(s)	57, 139, 280, 585, 647, 857, 969, 1206, 1426
Sau96I	GGNCC	3 cut(s)	48, 191, 1001
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	8 cut(s)	120, 156, 206, 236, 684, 1354, 1408, 1483
SduI	GDGCHC	6 cut(s)	18, 294, 552, 680, 1153, 1404
SfaNI	GCATC	6 cut(s)	18, 218, 756, 998, 1054, 1376
SfoI	GGCGCC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	1001
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	3 cut(s)	504, 1104, 1473
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	9 cut(s)	199, 477, 935, 948, 1072, 1264, 1531, 1738, 1792
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	5 cut(s)	308, 426, 591, 1719, 1743
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	8 cut(s)	118, 154, 204, 234, 682, 1352, 1406, 1481
StyI	CCWWGG	3 cut(s)	525, 655, 997
TaaI	ACNGT	4 cut(s)	1574, 1610, 1637, 1772
TaiI	ACGT	5 cut(s)	104, 183, 829, 1063, 1362
TaqI	TCGA	6 cut(s)	63, 294, 302, 484, 992, 1179
TaqII	GACCGA	1 cut(s)	1275
TasI	AATT	9 cut(s)	199, 477, 935, 948, 1072, 1264, 1531, 1738, 1792
TauI	GCSGC	4 cut(s)	59, 141, 282, 859
TfiI	GAWTC	5 cut(s)	486, 514, 974, 1369, 1392
Tru1I	TTAA	3 cut(s)	183, 771, 806
Tru9I	TTAA	3 cut(s)	183, 771, 806
TscAI	CASTG	3 cut(s)	1435, 1585, 1777
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	5 cut(s)	584, 646, 968, 1205, 1425
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	730, 768, 853, 1271
TspRI	CASTG	3 cut(s)	1435, 1585, 1777
VpaK11BI	GGWCC	1 cut(s)	1001
XapI	RAATTY	3 cut(s)	199, 948, 1792
XceI	RCATGY	2 cut(s)	1022, 1441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1234
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	5 cut(s)	308, 426, 591, 1719, 1743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.