Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8132516.1

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 526

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8132516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgcggttgctggtccgcagaaacatcttcacctcacatcatggcggtggagattctggagaaaccctctacgggttgactccttcgtctagatggctcttgtatgactcggagctcactctcgctccgatggttctctcggagacaaatcctattctaatggctccaatgcactatttcagccaatgcgtcaagcaaggtggcccatgtgcctttgagaaagcgcatgggcgcgacattgtgcaattcttctccgaaaaccttgagatcaaccgattgttcaacgatgccatggcgtgtacctctaagattataatgaaagtgatacttgccaaatataagggtgggtttgatgacgtggcaaaactggtggatgttggtggtggtacaggaaccgctgtggcggagattgtgaaggcgtatcccatcattaacgggatcaactttgatctaccatatgtggttgcaacagcaccggcttaccatggggtgtcacatgtcggaggtgacatgtttgatgagggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

175

Amino Acids

19.02

Weight (kDa)

5.82

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AasI	GACNNNNNNGTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	234
AciI	CCGC	5 cut(s)	4, 16, 45, 396, 404
AclWI	GGATC	1 cut(s)	446
AfaI	GTAC	2 cut(s)	301, 388
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflIII	ACRYGT	2 cut(s)	496, 510
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	358
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	226, 234
AspS9I	GGNCC	2 cut(s)	13, 203
AsuHPI	GGTGA	2 cut(s)	22, 518
AvaII	GGWCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	3 cut(s)	87, 124, 434
BciVI	GTATCC	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	13
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	13, 203
BmiI	GGNNCC	2 cut(s)	165, 394
BmsI	GCATC	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	291, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	291, 484
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	267, 438, 448
Bsp19I	CCATGG	2 cut(s)	291, 484
BspACI	CCGC	5 cut(s)	4, 16, 45, 396, 404
BspANI	GGCC	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	165, 394
BspPI	GGATC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	291, 484
BssMI	GATC	3 cut(s)	267, 438, 448
BssT1I	CCWWGG	2 cut(s)	291, 484
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	2 cut(s)	291, 484
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	226, 234
BstKTI	GATC	3 cut(s)	270, 441, 451
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	267, 438, 448
BstNSI	RCATGY	2 cut(s)	500, 514
BstUI	CGCG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	2 cut(s)	291, 484
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	379
CfoI	GCGC	2 cut(s)	226, 234
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	13, 203
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	300, 387
CspCI	CAANNNNNGTGG	4 cut(s)	181, 216, 351, 386
CviAII	CATG	7 cut(s)	41, 207, 227, 292, 485, 497, 511
CviJI	RGCY	6 cut(s)	97, 115, 164, 183, 204, 479
CviKI_1	RGCY	6 cut(s)	97, 115, 164, 183, 204, 479
CviQI	GTAC	2 cut(s)	300, 387
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	269, 440, 450
DpnII	GATC	3 cut(s)	267, 438, 448
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	291, 484
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	291, 484
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	291, 484
FaeI	CATG	7 cut(s)	44, 210, 230, 295, 488, 500, 514
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	7 cut(s)	40, 206, 226, 291, 484, 496, 510
FauNDI	CATATG	1 cut(s)	457
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	225, 233
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	2 cut(s)	226, 234
Hin1II	CATG	7 cut(s)	44, 210, 230, 295, 488, 500, 514
Hin6I	GCGC	2 cut(s)	224, 232
HinP1I	GCGC	2 cut(s)	224, 232
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	53, 79, 107
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	2 cut(s)	22, 518
Hpy166II	GTNNAC	2 cut(s)	78, 300
Hpy188I	TCNGA	5 cut(s)	112, 129, 142, 256, 503
Hpy188III	TCNNGA	2 cut(s)	57, 90
Hpy8I	GTNNAC	2 cut(s)	78, 300
HpyAV	CCTTC	2 cut(s)	93, 409
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	3 cut(s)	172, 244, 467
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	7 cut(s)	44, 210, 230, 295, 488, 500, 514
HspAI	GCGC	2 cut(s)	224, 232
Kzo9I	GATC	3 cut(s)	267, 438, 448
LmnI	GCTCC	3 cut(s)	112, 130, 169
LpnPI	CCDG	4 cut(s)	42, 353, 375, 489
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	492, 506
MalI	GATC	3 cut(s)	269, 440, 450
MboI	GATC	3 cut(s)	267, 438, 448
MboII	GAAGA	2 cut(s)	19, 241
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	73, 101
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	5 cut(s)	43, 77, 313, 497, 514
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	476
MvnI	CGCG	1 cut(s)	234
NcoI	CCATGG	2 cut(s)	291, 484
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	3 cut(s)	267, 438, 448
NlaIII	CATG	7 cut(s)	44, 210, 230, 295, 488, 500, 514
NlaIV	GGNNCC	2 cut(s)	165, 394
NmuCI	GTSAC	2 cut(s)	492, 506
NspI	RCATGY	2 cut(s)	500, 514
PciI	ACATGT	2 cut(s)	496, 510
PfeI	GAWTC	1 cut(s)	53
PleI	GAGTC	2 cut(s)	73, 101
PpsI	GAGTC	2 cut(s)	73, 101
PscI	ACATGT	2 cut(s)	496, 510
PsiI	TTATAA	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	165, 394
PspPI	GGNCC	2 cut(s)	13, 203
RsaI	GTAC	2 cut(s)	301, 388
RsaNI	GTAC	2 cut(s)	300, 387
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	3 cut(s)	267, 438, 448
Sau96I	GGNCC	2 cut(s)	13, 203
SchI	GAGTC	2 cut(s)	73, 101
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	35, 117, 202, 264, 305, 360, 508
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	5 cut(s)	4, 16, 45, 396, 404
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	291, 484
TaiI	ACGT	1 cut(s)	360
TasI	AATT	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	492, 506
Tsp45I	GTSAC	2 cut(s)	492, 506
TspDTI	ATGAA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	2 cut(s)	500, 514
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.