Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

23080194 .. 23081599

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G235500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAGCAACAGAGGCTGAGGCAATGCTTAGAGGTCAAGCAGATATATGGAAGTACATGTTTGGCTTTGCAGATTCCATGGCATTGAAATGTGCTGTGGAGCTACGCATAGCTGATATAATACACTCTCATGCTCCTACTGATCATATGATCACTCTGTCCCAAATAGCCTCACACTTAATAGCACCCTCTCCAGACATCACATGCCTCACACGCATCATGAGACTTCTCGTCCGCCGAAACATCTTCGCCGTTCATCACCCGTCCGAAGGGGGAGAACCTGTCTATGGGTTGACCTACTCGTCACGATGGCTGCTACATGACTCGGAGATGAGCCTAGCTCCAATGCTTGTGATGGAGAATCACCCCTCCCTAATGGCGCCATGGCACTATTTCAGCCAATGTGTCAGAGAAGGAGGGCCTTGGGCCTTCAAGAAGGCGCATGGGCTTGAGATTTGGGACTTTGCCTCTGAAAATCCAGGGTTCAACAAATTGTTCAACGATGGCATGGCCTGCACGGCTAGGATTGTGATGAAGGCAATACTCACAGAATATGGACGCTGGTTTGATGGGGTGGGGTCCTTGGTGGATGTAGGCGGTGGGACCGGAAGTGCAGTGGCTGATATTGTGCAGGCCTACCCCAACATCAAGGGTTTCAATTTTGATCTGCCACATGTTGTAGCCACAGCACCAGCGTACCATGGAGTGTCACATGTTGGAGGTGACATGTTTGAGGACCATATTCCAAATGCTGATGCTGTTTTCATGAAGTGGATTATGCACGATTGGAATGACTCTGATTGCATCAAGATTTTGAAGAACTGTCGAAAAGCAATACCAGAGAGAGGTGGGAAGATCATGATCGCTGATATAGTTCTAGAGCCAAGTGGTGATGGGGTGCTGGACGACACACGATTGGTGTTTGATCTAGTGATGATTGCACACGCGTCAGGTGGAAAGGAGAGGACTGAGAATGAATGGGAGAAGATACTGAAAGAAGGAGGTTTCCCTCGCTACAAAATCATCAAAATTCCAGCTCTGTTATCCATTATTGAGGCCTACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

357

Amino Acids

39.56

Weight (kDa)

5.71

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	379
AccII	CGCG	1 cut(s)	947
AciI	CCGC	2 cut(s)	235, 597
AcsI	RAATTY	1 cut(s)	1029
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	2 cut(s)	56, 698
AfiI	CCNNNNNNNGG	3 cut(s)	269, 287, 845
AflIII	ACRYGT	5 cut(s)	57, 673, 712, 726, 945
AgsI	TTSAA	6 cut(s)	88, 433, 487, 499, 658, 817
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	103, 113, 341, 1037
AluI	AGCT	4 cut(s)	103, 113, 341, 1037
Alw26I	GTCTC	1 cut(s)	217
AlwNI	CAGNNNCTG	2 cut(s)	17, 620
AoxI	GGCC	5 cut(s)	419, 426, 510, 633, 1056
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	1029
AspLEI	GCGC	2 cut(s)	382, 442
AspS9I	GGNCC	5 cut(s)	419, 426, 579, 603, 736
AsuHPI	GGTGA	4 cut(s)	251, 356, 734, 902
AvaII	GGWCC	3 cut(s)	579, 603, 736
BaeI	ACNNNNGTAYC	2 cut(s)	680, 713
BanI	GGYRCC	1 cut(s)	379
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	5 cut(s)	303, 349, 497, 563, 887
BceAI	ACGGC	2 cut(s)	236, 534
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	2 cut(s)	142, 150
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	4 cut(s)	338, 522, 878, 929
BfoI	RGCGCY	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	518
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	3 cut(s)	579, 603, 736
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgT120I	GGNCC	5 cut(s)	419, 426, 579, 603, 736
BmiI	GGNNCC	3 cut(s)	381, 580, 604
BmrFI	CCNGG	1 cut(s)	480
BmsI	GCATC	3 cut(s)	225, 745, 813
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	860
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	6 cut(s)	78, 383, 422, 479, 582, 700
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 287, 845
Bse3DI	GCAATG	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	860
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	6 cut(s)	78, 383, 422, 479, 582, 700
BseGI	GGATG	1 cut(s)	595
BseJI	GATNNNNATC	1 cut(s)	860
BseLI	CCNNNNNNNGG	3 cut(s)	269, 287, 845
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	2 cut(s)	9, 960
BseXI	GCAGC	1 cut(s)	300
BsgI	GTGCAG	3 cut(s)	499, 633, 650
Bsh1236I	CGCG	1 cut(s)	947
BshFI	GGCC	5 cut(s)	421, 428, 512, 635, 1058
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	3 cut(s)	145, 473, 616
BslI	CCNNNNNNNGG	3 cut(s)	269, 287, 845
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	3 cut(s)	145, 473, 616
BsnI	GGCC	5 cut(s)	421, 428, 512, 635, 1058
Bsp143I	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
Bsp19I	CCATGG	3 cut(s)	78, 383, 700
BspACI	CCGC	2 cut(s)	235, 597
BspANI	GGCC	5 cut(s)	421, 428, 512, 635, 1058
BspCNI	CTCAG	2 cut(s)	10, 961
BspFNI	CGCG	1 cut(s)	947
BspHI	TCATGA	3 cut(s)	219, 765, 858
BspLI	GGNNCC	3 cut(s)	381, 580, 604
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	6 cut(s)	78, 383, 422, 479, 582, 700
BssMI	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
BssNI	GRCGYC	1 cut(s)	380
BssT1I	CCWWGG	5 cut(s)	78, 383, 422, 582, 700
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	824
BstACI	GRCGYC	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	514, 633
BstDEI	CTNAG	3 cut(s)	18, 29, 969
BstDSI	CCRYGG	3 cut(s)	78, 383, 700
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	947
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	2 cut(s)	382, 442
BstKTI	GATC	6 cut(s)	145, 153, 667, 858, 864, 928
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 213, 513, 518
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	5 cut(s)	61, 207, 677, 716, 730
BstSCI	CCNGG	1 cut(s)	478
BstUI	CGCG	1 cut(s)	947
BstV1I	GCAGC	1 cut(s)	300
BsuRI	GGCC	5 cut(s)	421, 428, 512, 635, 1058
BtgI	CCRYGG	3 cut(s)	78, 383, 700
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	2 cut(s)	514, 633
CaiI	CAGNNNCTG	2 cut(s)	17, 620
CciI	TCATGA	3 cut(s)	219, 765, 858
CfoI	GCGC	2 cut(s)	382, 442
Cfr13I	GGNCC	5 cut(s)	419, 426, 579, 603, 736
CseI	GACGC	2 cut(s)	567, 936
Csp6I	GTAC	2 cut(s)	55, 697
CviQI	GTAC	2 cut(s)	55, 697
DdeI	CTNAG	3 cut(s)	18, 29, 969
DinI	GGCGCC	1 cut(s)	381
DpnI	GATC	6 cut(s)	144, 152, 666, 857, 863, 927
DpnII	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
DrdI	GACNNNNNNGTC	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	301
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	5 cut(s)	78, 383, 422, 582, 700
Eco147I	AGGCCT	2 cut(s)	635, 1058
Eco47I	GGWCC	3 cut(s)	579, 603, 736
EcoO109I	RGGNCCY	2 cut(s)	419, 579
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	5 cut(s)	78, 383, 422, 582, 700
EgeI	GGCGCC	1 cut(s)	381
EheI	GGCGCC	1 cut(s)	381
ErhI	CCWWGG	5 cut(s)	78, 383, 422, 582, 700
FaqI	GGGAC	3 cut(s)	145, 473, 616
FauNDI	CATATG	1 cut(s)	147
FbaI	TGATCA	2 cut(s)	142, 150
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	4 cut(s)	338, 522, 878, 929
GlaI	GCGC	2 cut(s)	381, 441
GluI	GCNGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	5 cut(s)	421, 428, 512, 635, 1058
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	2 cut(s)	567, 936
HhaI	GCGC	2 cut(s)	382, 442
Hin1I	GRCGYC	1 cut(s)	380
Hin6I	GCGC	2 cut(s)	380, 440
HinP1I	GCGC	2 cut(s)	380, 440
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	4 cut(s)	74, 323, 361, 794
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	4 cut(s)	251, 356, 734, 902
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	5 cut(s)	268, 328, 410, 472, 799
Hpy188III	TCNNGA	8 cut(s)	194, 220, 306, 433, 766, 808, 859, 878
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	6 cut(s)	263, 407, 430, 439, 529, 992
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4V	TGCA	7 cut(s)	71, 516, 614, 631, 781, 804, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 213, 513, 518
HpyF3I	CTNAG	3 cut(s)	18, 29, 969
Hsp92I	GRCGYC	1 cut(s)	380
HspAI	GCGC	2 cut(s)	380, 440
KasI	GGCGCC	1 cut(s)	379
Ksp22I	TGATCA	2 cut(s)	142, 150
Kzo9I	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
LmnI	GCTCC	3 cut(s)	100, 139, 346
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	3 cut(s)	225, 745, 813
MaeI	CTAG	4 cut(s)	338, 522, 878, 929
MaeIII	GTNAC	3 cut(s)	303, 708, 722
MalI	GATC	6 cut(s)	144, 152, 666, 857, 863, 927
MboI	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
MboII	GAAGA	4 cut(s)	238, 829, 865, 997
MluCI	AATT	3 cut(s)	491, 658, 1029
MluI	ACGCGT	1 cut(s)	945
Mly113I	GGCGCC	1 cut(s)	380
MlyI	GAGTC	2 cut(s)	317, 788
MmeI	TCCRAC	1 cut(s)	697
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	2 cut(s)	88, 129
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	947
MwoI	GCNNNNNNNGC	4 cut(s)	14, 213, 513, 518
NarI	GGCGCC	1 cut(s)	380
NcoI	CCATGG	3 cut(s)	78, 383, 700
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
NlaIV	GGNNCC	3 cut(s)	381, 580, 604
NmuCI	GTSAC	3 cut(s)	303, 708, 722
NspI	RCATGY	5 cut(s)	61, 207, 677, 716, 730
PagI	TCATGA	3 cut(s)	219, 765, 858
PceI	AGGCCT	2 cut(s)	635, 1058
PciI	ACATGT	4 cut(s)	57, 673, 712, 726
PfeI	GAWTC	2 cut(s)	74, 361
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	2 cut(s)	317, 788
PluTI	GGCGCC	1 cut(s)	383
PpsI	GAGTC	2 cut(s)	317, 788
PpuMI	RGGWCCY	1 cut(s)	579
PscI	ACATGT	4 cut(s)	57, 673, 712, 726
Psp5II	RGGWCCY	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	3 cut(s)	381, 580, 604
PspPI	GGNCC	5 cut(s)	419, 426, 579, 603, 736
PspPPI	RGGWCCY	1 cut(s)	579
PstNI	CAGNNNCTG	2 cut(s)	17, 620
RsaI	GTAC	2 cut(s)	56, 698
RsaNI	GTAC	2 cut(s)	55, 697
RseI	CAYNNNNRTG	2 cut(s)	88, 129
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	6 cut(s)	142, 150, 664, 855, 861, 925
Sau96I	GGNCC	5 cut(s)	419, 426, 579, 603, 736
SchI	GAGTC	2 cut(s)	317, 788
ScrFI	CCNGG	1 cut(s)	480
SfaNI	GCATC	3 cut(s)	225, 745, 813
SfoI	GGCGCC	1 cut(s)	381
SinI	GGWCC	3 cut(s)	579, 603, 736
SmiMI	CAYNNNNRTG	2 cut(s)	88, 129
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	491, 658, 1029
SseBI	AGGCCT	2 cut(s)	635, 1058
SsiI	CCGC	2 cut(s)	235, 597
SspDI	GGCGCC	1 cut(s)	379
SspMI	CTAG	4 cut(s)	338, 522, 878, 929
StuI	AGGCCT	2 cut(s)	635, 1058
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	5 cut(s)	78, 383, 422, 582, 700
TaaI	ACNGT	1 cut(s)	824
TaqI	TCGA	1 cut(s)	826
TasI	AATT	3 cut(s)	491, 658, 1029
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	74, 361
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	3 cut(s)	303, 708, 722
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	3 cut(s)	303, 708, 722
TspDTI	ATGAA	5 cut(s)	245, 548, 754, 782, 990
TspRI	CASTG	1 cut(s)	621
VpaK11BI	GGWCC	3 cut(s)	579, 603, 736
XapI	RAATTY	1 cut(s)	1029
XbaI	TCTAGA	1 cut(s)	877
XceI	RCATGY	5 cut(s)	61, 207, 677, 716, 730
XspI	CTAG	4 cut(s)	338, 522, 878, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.