Rroxscaffold_5G00369300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
51116558 .. 51120349
3792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369300.1

Sequence Viewer

Length: 1080 bp
ATGGAAGCAGTTACAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGACGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTGAAATGTGTTGTGGAGCTCCGGATACCAGATATCATACACTCTAATGGTCATGCAATGACTTTGTCTGAAATAGCCTGCTCCTTCAACTCTGCATCACCTTGTCCAGACATCACATGCTTCTCTCGCATCATGCAGTTGCTAGTTCACAGAAACATCTTCACTGCACAACCTGATGGTGGAGATTCCGGAGAAACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCCGATGGTTCTCATGGAGACAAATCCTACTCTAATGGAGCCATGGCACTATTTCAGCCAATGCGTCAAGCAAGGTGCCCCATGCACTTTTGAGAAAGCACATGGCAGCGACATTTGGCAATTCTTCGTCGAAAAACCCGAATTCAACCGATTGTTCAATGATAGCATGACATGCACCGCTAAGATTACAATGAAAGCGATACTCACAGGATATAAGGGTGGGTTTGATAACGTGGCAACACTGGTGGATGTTGGGGGTGGGACTGGAAGTGCAATGGCGGAGATTGTGAAGTTGTATCCCAGCATTAGGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGGTGTACCATGGGGTGTCACATGTTGGAGGTAACATGTTTGATGACGGCAATATTCCAAACACTGATGCAATTTTCATGATGAGGATTATGCACGACTGGAGCAACATCGATTGCGTAAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAACGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGGTAATGATTGCACACACCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATGTTGGAACAAGCAGGCTTCCCTAGTTACAAAATCATCAAAATTCCAGCTTTATCGTCCATTATTGAGGCCTACCCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

359

Amino Acids

39.72

Weight (kDa)

5.27

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 19 - 109 1.5e-18 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 131 - 339 1.5e-59 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 422
AccIII TCCGGA 2 cut(s) 111, 278
AciI CCGC 2 cut(s) 525, 626
AcsI RAATTY 2 cut(s) 488, 1038
AfaI GTAC 2 cut(s) 62, 704
AfiI CCNNNNNNNGG 3 cut(s) 269, 294, 654
AflIII ACRYGT 3 cut(s) 679, 718, 732
AgsI TTSAA 5 cut(s) 94, 178, 493, 505, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AluBI AGCT 3 cut(s) 109, 347, 1046
AluI AGCT 3 cut(s) 109, 347, 1046
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 359
Aor13HI TCCGGA 2 cut(s) 111, 278
AoxI GGCC 2 cut(s) 40, 1065
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 2 cut(s) 488, 1038
AspLEI GCGC 1 cut(s) 697
AsuHPI GGTGA 3 cut(s) 180, 877, 911
AxyI CCTNAGG 1 cut(s) 958
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 465
BccI CCATC 4 cut(s) 260, 309, 346, 896
BceAI ACGGC 1 cut(s) 760
BciVI GTATCC 2 cut(s) 108, 654
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 5 cut(s) 233, 312, 344, 887, 1020
BfoI RGCGCY 1 cut(s) 698
BfuI GTATCC 2 cut(s) 108, 654
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 387, 424
BmsI GCATC 4 cut(s) 194, 228, 669, 754
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpmI CTGGAG 1 cut(s) 817
Bsa29I ATCGAT 1 cut(s) 807
BsaJI CCNNGG 3 cut(s) 84, 389, 706
BsaWI WCCGGW 3 cut(s) 111, 278, 847
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 294, 654
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 3 cut(s) 594, 616, 800
Bse21I CCTNAGG 1 cut(s) 958
Bse3DI GCAATG 2 cut(s) 153, 627
BseAI TCCGGA 2 cut(s) 111, 278
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 3 cut(s) 84, 389, 706
BseGI GGATG 2 cut(s) 28, 601
BseLI CCNNNNNNNGG 3 cut(s) 269, 294, 654
BseMI GCAATG 2 cut(s) 153, 627
BseMII CTCAG 2 cut(s) 969, 972
BseNI ACTGG 3 cut(s) 594, 616, 800
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 647
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 42, 1067
BshNI GGYRCC 1 cut(s) 422
BshVI ATCGAT 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 4 cut(s) 112, 279, 698, 848
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 269, 294, 654
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 2 cut(s) 42, 1067
Bsp1286I GDGCHC 2 cut(s) 111, 427
Bsp13I TCCGGA 2 cut(s) 111, 278
Bsp143I GATC 1 cut(s) 670
Bsp19I CCATGG 3 cut(s) 84, 389, 706
BspACI CCGC 2 cut(s) 525, 626
BspANI GGCC 2 cut(s) 42, 1067
BspCNI CTCAG 2 cut(s) 970, 971
BspDI ATCGAT 1 cut(s) 807
BspEI TCCGGA 2 cut(s) 111, 278
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 2 cut(s) 387, 424
BspT107I GGYRCC 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 153, 627
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 3 cut(s) 594, 616, 800
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 3 cut(s) 84, 389, 706
BssMI GATC 1 cut(s) 670
BssT1I CCWWGG 3 cut(s) 84, 389, 706
Bst4CI ACNGT 2 cut(s) 833, 899
BstAPI GCANNNNNTGC 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 169, 1012
BstDEI CTNAG 4 cut(s) 35, 528, 958, 978
BstDSI CCRYGG 3 cut(s) 84, 389, 706
BstF5I GGATG 2 cut(s) 28, 601
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 3 cut(s) 216, 519, 657
BstNSI RCATGY 7 cut(s) 67, 210, 522, 683, 722, 736, 910
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 465
Bsu15I ATCGAT 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 958
BsuI GTATCC 2 cut(s) 108, 654
BsuRI GGCC 2 cut(s) 42, 1067
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 3 cut(s) 84, 389, 706
BtsCI GGATG 2 cut(s) 28, 601
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 252, 587, 759
Cac8I GCNNGC 2 cut(s) 169, 1012
CciI TCATGA 1 cut(s) 774
CfoI GCGC 1 cut(s) 697
Cfr10I RCCGGY 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 1 cut(s) 400
Csp6I GTAC 2 cut(s) 61, 703
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviQI GTAC 2 cut(s) 61, 703
DdeI CTNAG 4 cut(s) 35, 528, 958, 978
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 84, 389, 706
Eco147I AGGCCT 1 cut(s) 1067
Eco24I GRGCYC 1 cut(s) 111
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 958
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 488
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 84, 389, 706
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 3 cut(s) 84, 389, 706
FaqI GGGAC 1 cut(s) 622
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 2 cut(s) 35, 608
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 5 cut(s) 233, 312, 344, 887, 1020
GlaI GCGC 1 cut(s) 696
GluI GCNGC 1 cut(s) 454
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 817
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 2 cut(s) 42, 1067
HapII CCGG 4 cut(s) 112, 279, 698, 848
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 697
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 4 cut(s) 80, 275, 301, 329
HpaII CCGG 4 cut(s) 112, 279, 698, 848
HphI GGTGA 3 cut(s) 180, 877, 911
Hpy166II GTNNAC 5 cut(s) 238, 300, 339, 703, 877
Hpy188I TCNGA 3 cut(s) 160, 334, 351
Hpy188III TCNNGA 6 cut(s) 112, 197, 279, 312, 775, 887
Hpy8I GTNNAC 5 cut(s) 238, 300, 339, 703, 877
Hpy99I CGWCG 2 cut(s) 479, 917
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 833, 899
HpyCH4IV ACGT 3 cut(s) 51, 579, 879
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 519, 657
HpyF3I CTNAG 4 cut(s) 35, 528, 958, 978
HpySE526I ACGT 3 cut(s) 51, 579, 879
HspAI GCGC 1 cut(s) 695
Kpn2I TCCGGA 2 cut(s) 111, 278
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 6 cut(s) 106, 114, 176, 352, 385, 798
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 4 cut(s) 194, 228, 669, 754
MaeI CTAG 5 cut(s) 233, 312, 344, 887, 1020
MaeII ACGT 3 cut(s) 51, 579, 879
MaeIII GTNAC 4 cut(s) 10, 714, 728, 1022
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 4 cut(s) 241, 463, 1003, 1006
MhlI GDGCHC 2 cut(s) 111, 427
MluCI AATT 5 cut(s) 17, 467, 488, 768, 1038
MlyI GAGTC 2 cut(s) 295, 323
MmeI TCCRAC 2 cut(s) 703, 981
MnlI CCTC 7 cut(s) 32, 299, 719, 774, 966, 967, 1057
MroI TCCGGA 2 cut(s) 111, 278
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 4 cut(s) 112, 279, 698, 848
MwoI GCNNNNNNNGC 3 cut(s) 216, 519, 657
NcoI CCATGG 3 cut(s) 84, 389, 706
NdeII GATC 1 cut(s) 670
NlaIV GGNNCC 2 cut(s) 387, 424
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 714
NspI RCATGY 7 cut(s) 67, 210, 522, 683, 722, 736, 910
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 1067
PciI ACATGT 3 cut(s) 679, 718, 732
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 2 cut(s) 80, 275
PflFI GACNNNGTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 455
PleI GAGTC 2 cut(s) 295, 323
PpsI GAGTC 2 cut(s) 295, 323
PscI ACATGT 3 cut(s) 679, 718, 732
Psp124BI GAGCTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 647
PspN4I GGNNCC 2 cut(s) 387, 424
PsyI GACNNNGTC 1 cut(s) 154
RsaI GTAC 2 cut(s) 62, 704
RsaNI GTAC 2 cut(s) 61, 703
RseI CAYNNNNRTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 111
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 1 cut(s) 670
SchI GAGTC 2 cut(s) 295, 323
SduI GDGCHC 2 cut(s) 111, 427
SfaNI GCATC 4 cut(s) 194, 228, 669, 754
SgrAI CRCCGGYG 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 5 cut(s) 17, 467, 488, 768, 1038
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 2 cut(s) 525, 626
SspI AATATT 1 cut(s) 751
SspMI CTAG 5 cut(s) 233, 312, 344, 887, 1020
SstI GAGCTC 1 cut(s) 111
StuI AGGCCT 1 cut(s) 1067
StyI CCWWGG 3 cut(s) 84, 389, 706
TaaI ACNGT 2 cut(s) 833, 899
TaiI ACGT 3 cut(s) 54, 582, 882
TaqI TCGA 4 cut(s) 477, 807, 835, 912
TasI AATT 5 cut(s) 17, 467, 488, 768, 1038
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 80, 275
TscAI CASTG 3 cut(s) 259, 594, 766
TseFI GTSAC 1 cut(s) 714
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 714
TspDTI ATGAA 3 cut(s) 39, 554, 763
TspRI CASTG 3 cut(s) 259, 594, 766
Tth111I GACNNNGTC 1 cut(s) 154
XapI RAATTY 2 cut(s) 488, 1038
XbaI TCTAGA 2 cut(s) 311, 886
XceI RCATGY 7 cut(s) 67, 210, 522, 683, 722, 736, 910
XspI CTAG 5 cut(s) 233, 312, 344, 887, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.