Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

6573918 .. 6575395

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1089800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCAGGAAGAACCAGAAATTGAGGCAAGCCTAAGAGGCCAAGCAGATATATGGAAGTACATGTTTGGTTTTGCTGATTCCATGGCCTTAAAATGTGCTGTGGAGCTACGCATAGCCGATATCATACACTCCCATAGACCTAGTGATGGTGCCTCAAACTCAAACCCTATGATCGCTTTGTCCCAATTAGCCTCATGCATAGCACCCTCCCCAGACATCACTTCCCTCACACGCATCATGAGACTTCTTGTCCGCCGGAATATATTCGCCGTTCATCACCCATCTGATGGCGGGGAACCTCTTTATGGTTTGACACATTCATCAAGATGGTTGTTACATGACGCAGAGCTGAGTCTAGCGCCTATACTTATGATGAATAATCACCCCTGCCTAATGGCGCCTTGGCACTATTTCAGCCGAAGAGTCAAAGAAGGAGGTCCATGTGCCTTTGAGATGGCCCATGGGCTTGATATTTGGGACTACGCTTCTCAAAATCCAGAGATCAACAAATTGTTCAATGATGGCATGGCCTGTACTTCTAGGTTTGAATTGAAGGAAATACTCACAGGTTATGAACATGGGTTTGATGGTGTGGGATCGTTAGTGGATGTAGGTGGTGGGACTGGAAGTGCAGTGGCTGAGATTGTCAAGGCCTATCCCAACATCAAAGGTTTCAATTTTGATCTGCCCCATGTCGTAGCCACAGCACCGGTGTACCATGGCGTGTCACATGTAGGTGGTGATATGTTTGAGGGCAATATTCCAAATGCGGATGCAGTTTTCATGAAGCGTATTATGCACGATTGGAGTGATAGTGATTGCATCAAGATTTTGAAGAATTGTCGAAAAGCAATACCCGAGAAAAGTGGCAAGATCATTATTGCTGATATAGTTCTAGAGCCAAATGGTGAAGGGACTCTGAATGACACACGATTGGTCATTGATTTAGTGATGATTGCACACACGTCAGGAAGGGAGAGAACCGAGAATGAATGGAAGAAGATATTGGAAGAAGGAGGTTTCCCTCGCCACAAAGTCATCAAAATTCCAGCTTTAGTATCCATTGTTGAGGCCTACCCTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

362

Amino Acids

39.91

Weight (kDa)

5.8

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	18 - 113	9.4e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	135 - 341	2.5e-63	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	149, 397
AccB7I	CCANNNNNTGG	1 cut(s)	287
AciI	CCGC	3 cut(s)	253, 291, 770
AclWI	GGATC	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	1044
AcyI	GRCGYC	1 cut(s)	398
AfaI	GTAC	3 cut(s)	59, 535, 716
AfiI	CCNNNNNNNGG	3 cut(s)	146, 287, 305
AflIII	ACRYGT	3 cut(s)	60, 730, 963
AgeI	ACCGGT	1 cut(s)	709
AgsI	TTSAA	5 cut(s)	517, 548, 553, 676, 835
AhdI	GACNNNNNGTC	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	966
AjuI	GAANNNNNNNTTGG	2 cut(s)	989, 1021
AluBI	AGCT	3 cut(s)	106, 349, 1052
AluI	AGCT	3 cut(s)	106, 349, 1052
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	604
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	857
AoxI	GGCC	6 cut(s)	37, 84, 456, 528, 651, 1071
ApoI	RAATTY	1 cut(s)	1044
AsiGI	ACCGGT	1 cut(s)	709
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	361, 400
AspS9I	GGNCC	2 cut(s)	437, 457
AsuHPI	GGTGA	4 cut(s)	269, 374, 752, 920
AvaI	CYCGRG	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	437
BaeI	ACNNNNGTAYC	2 cut(s)	698, 731
BanI	GGYRCC	2 cut(s)	149, 397
BccI	CCATC	7 cut(s)	140, 281, 289, 321, 448, 515, 581
BceAI	ACGGC	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	1069
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	4 cut(s)	141, 356, 540, 896
BfoI	RGCGCY	2 cut(s)	362, 401
BfuI	GTATCC	1 cut(s)	1069
BglI	GCCNNNNNGGC	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	437
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	857
BmgBI	CACGTC	1 cut(s)	966
BmgT120I	GGNCC	2 cut(s)	437, 457
BmiI	GGNNCC	3 cut(s)	151, 297, 399
BmsI	GCATC	3 cut(s)	243, 763, 831
BsaHI	GRCGYC	1 cut(s)	398
BsaJI	CCNNGG	4 cut(s)	81, 401, 460, 718
BsaWI	WCCGGW	1 cut(s)	709
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 287, 305
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	1 cut(s)	628
BseDI	CCNNGG	4 cut(s)	81, 401, 460, 718
BseGI	GGATG	2 cut(s)	613, 778
BseLI	CCNNNNNNNGG	3 cut(s)	146, 287, 305
BseMII	CTCAG	2 cut(s)	341, 630
BseNI	ACTGG	1 cut(s)	628
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	6 cut(s)	39, 86, 458, 530, 653, 1073
BshNI	GGYRCC	2 cut(s)	149, 397
BshTI	ACCGGT	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	857
BsiSI	CCGG	2 cut(s)	256, 710
BslFI	GGGAC	4 cut(s)	166, 491, 634, 928
BslI	CCNNNNNNNGG	3 cut(s)	146, 287, 305
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	4 cut(s)	166, 491, 634, 928
BsnI	GGCC	6 cut(s)	39, 86, 458, 530, 653, 1073
BsoBI	CYCGRG	1 cut(s)	857
Bsp143I	GATC	5 cut(s)	171, 501, 596, 682, 873
Bsp19I	CCATGG	3 cut(s)	81, 460, 718
BspACI	CCGC	3 cut(s)	253, 291, 770
BspANI	GGCC	6 cut(s)	39, 86, 458, 530, 653, 1073
BspCNI	CTCAG	2 cut(s)	342, 631
BspHI	TCATGA	2 cut(s)	237, 783
BspLI	GGNNCC	3 cut(s)	151, 297, 399
BspPI	GGATC	1 cut(s)	604
BspT107I	GGYRCC	2 cut(s)	149, 397
BsrFI	RCCGGY	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	4 cut(s)	81, 401, 460, 718
BssMI	GATC	5 cut(s)	171, 501, 596, 682, 873
BssNI	GRCGYC	1 cut(s)	398
BssT1I	CCWWGG	4 cut(s)	81, 401, 460, 718
Bst6I	CTCTTC	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	32, 350, 639
BstDSI	CCRYGG	3 cut(s)	81, 460, 718
BstF5I	GGATG	2 cut(s)	613, 778
BstH2I	RGCGCY	2 cut(s)	362, 401
BstHHI	GCGC	2 cut(s)	361, 400
BstKTI	GATC	5 cut(s)	174, 504, 599, 685, 876
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	5 cut(s)	171, 501, 596, 682, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 796
BstNSI	RCATGY	2 cut(s)	64, 734
BsuI	GTATCC	1 cut(s)	1069
BsuRI	GGCC	6 cut(s)	39, 86, 458, 530, 653, 1073
BtgI	CCRYGG	3 cut(s)	81, 460, 718
BtrI	CACGTC	1 cut(s)	966
BtsCI	GGATG	2 cut(s)	613, 778
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	2 cut(s)	237, 783
CfoI	GCGC	2 cut(s)	361, 400
Cfr10I	RCCGGY	1 cut(s)	709
Cfr13I	GGNCC	2 cut(s)	437, 457
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	58, 534, 715
CspAI	ACCGGT	1 cut(s)	709
CviQI	GTAC	3 cut(s)	58, 534, 715
DdeI	CTNAG	3 cut(s)	32, 350, 639
DinI	GGCGCC	1 cut(s)	399
DpnI	GATC	5 cut(s)	173, 503, 598, 684, 875
DpnII	GATC	5 cut(s)	171, 501, 596, 682, 873
DriI	GACNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	415
Eam1105I	GACNNNNNGTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	4 cut(s)	81, 401, 460, 718
Eco147I	AGGCCT	2 cut(s)	653, 1073
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	857
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	4 cut(s)	81, 401, 460, 718
EcoT22I	ATGCAT	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
ErhI	CCWWGG	4 cut(s)	81, 401, 460, 718
FaqI	GGGAC	4 cut(s)	166, 491, 634, 928
FauI	CCCGC	1 cut(s)	284
FokI	GGATG	2 cut(s)	620, 785
FspBI	CTAG	4 cut(s)	141, 356, 540, 896
GlaI	GCGC	2 cut(s)	360, 399
HaeII	RGCGCY	2 cut(s)	362, 401
HaeIII	GGCC	6 cut(s)	39, 86, 458, 530, 653, 1073
HapII	CCGG	2 cut(s)	256, 710
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	361, 400
Hin1I	GRCGYC	1 cut(s)	398
Hin6I	GCGC	2 cut(s)	359, 398
HinP1I	GCGC	2 cut(s)	359, 398
HinfI	GANTC	4 cut(s)	77, 352, 423, 916
HpaII	CCGG	2 cut(s)	256, 710
HphI	GGTGA	4 cut(s)	269, 374, 752, 920
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	2 cut(s)	286, 921
Hpy188III	TCNNGA	7 cut(s)	238, 324, 497, 784, 826, 896, 969
Hpy8I	GTNNAC	1 cut(s)	715
HpyAV	CCTTC	5 cut(s)	425, 547, 905, 966, 1007
HpyCH4IV	ACGT	1 cut(s)	965
HpyCH4V	TGCA	7 cut(s)	4, 198, 632, 776, 799, 822, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 796
HpyF3I	CTNAG	3 cut(s)	32, 350, 639
HpySE526I	ACGT	1 cut(s)	965
Hsp92I	GRCGYC	1 cut(s)	398
HspAI	GCGC	2 cut(s)	359, 398
KasI	GGCGCC	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	171, 501, 596, 682, 873
LmnI	GCTCC	1 cut(s)	103
LweI	GCATC	3 cut(s)	243, 763, 831
MaeI	CTAG	4 cut(s)	141, 356, 540, 896
MaeII	ACGT	1 cut(s)	965
MaeIII	GTNAC	2 cut(s)	333, 726
MalI	GATC	5 cut(s)	173, 503, 598, 684, 875
MboI	GATC	5 cut(s)	171, 501, 596, 682, 873
MboII	GAAGA	6 cut(s)	20, 432, 847, 1009, 1012, 1022
MluCI	AATT	7 cut(s)	18, 185, 509, 548, 676, 838, 1044
Mly113I	GGCGCC	1 cut(s)	398
MlyI	GAGTC	3 cut(s)	361, 432, 910
Mph1103I	ATGCAT	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	2 cut(s)	325, 735
MspI	CCGG	2 cut(s)	256, 710
MwoI	GCNNNNNNNGC	2 cut(s)	36, 796
NarI	GGCGCC	1 cut(s)	398
NcoI	CCATGG	3 cut(s)	81, 460, 718
NdeII	GATC	5 cut(s)	171, 501, 596, 682, 873
NlaIV	GGNNCC	3 cut(s)	151, 297, 399
NmuCI	GTSAC	1 cut(s)	726
NsiI	ATGCAT	1 cut(s)	200
NspI	RCATGY	2 cut(s)	64, 734
PagI	TCATGA	2 cut(s)	237, 783
PceI	AGGCCT	2 cut(s)	653, 1073
PciI	ACATGT	2 cut(s)	60, 730
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	709
PleI	GAGTC	3 cut(s)	360, 431, 910
PluTI	GGCGCC	1 cut(s)	401
PpsI	GAGTC	3 cut(s)	360, 431, 910
PscI	ACATGT	2 cut(s)	60, 730
PspN4I	GGNNCC	3 cut(s)	151, 297, 399
PspPI	GGNCC	2 cut(s)	437, 457
PstNI	CAGNNNCTG	1 cut(s)	638
RsaI	GTAC	3 cut(s)	59, 535, 716
RsaNI	GTAC	3 cut(s)	58, 534, 715
RseI	CAYNNNNRTG	2 cut(s)	325, 735
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	5 cut(s)	171, 501, 596, 682, 873
Sau96I	GGNCC	2 cut(s)	437, 457
SchI	GAGTC	3 cut(s)	361, 432, 910
SfaNI	GCATC	3 cut(s)	243, 763, 831
SfoI	GGCGCC	1 cut(s)	399
SgrAI	CRCCGGYG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	325, 735
Sse9I	AATT	7 cut(s)	18, 185, 509, 548, 676, 838, 1044
SseBI	AGGCCT	2 cut(s)	653, 1073
SsiI	CCGC	3 cut(s)	253, 291, 770
SspDI	GGCGCC	1 cut(s)	397
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	4 cut(s)	141, 356, 540, 896
StuI	AGGCCT	2 cut(s)	653, 1073
StyI	CCWWGG	4 cut(s)	81, 401, 460, 718
TaiI	ACGT	1 cut(s)	968
TaqI	TCGA	1 cut(s)	844
TasI	AATT	7 cut(s)	18, 185, 509, 548, 676, 838, 1044
TatI	WGTACW	2 cut(s)	57, 533
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	1 cut(s)	726
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	7 cut(s)	263, 309, 389, 588, 772, 800, 1005
TspRI	CASTG	1 cut(s)	639
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	1044
XbaI	TCTAGA	1 cut(s)	895
XceI	RCATGY	2 cut(s)	64, 734
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	4 cut(s)	141, 356, 540, 896
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.