Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

37815747 .. 37817365

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAGTCAACAACAGCCGAGGAGGCCTCAGGAGGGGCAAGAACCCGTCAAGTACGGCGACATTTTCAATGTCTCCGGGGACCTCGCATCCAAGACGGTGGCGCCACAAGATGCTGCGATGATGCAGACCGCTGAAACCATGGTGTTGGGGCAGACCCAGAAGGGCGGTCCGGCAGCTGTCATGCAGTCGGCCGCCACCCGAAACGAGAGAGCTGGCCTCGTCCGCCACGATGAGGCTACTGATGTAGCTGGACATGAAGGTGTCACTGTTACAGAGACTGATGTCCCTGGAAGGCGAATAATCACTGAATCAGTTGGTGGACTGGTTATTGGCCAGTATGTGGAGCCAACACCGGTTACACAAGTAGCTGCGGGAGGCTTCATGCAGCAGAATGCAATAACTATAGGCGAGGCACTGGAGGCCTCGGCCCAAACAGCTGGGGATAGGCCAGTGGATCAGAGCGATGCAGCGGCAATTCAGGCTGCAGAGGTGAGAGCAACAGGCAGCAATGTGATAATTCCAGGGGGCCTGGCTGCCACGGCTCAATCTGCCGCAGCTCATAATGCGGGGACTGAAAGGGAGCAAGACAAGATTAAGGTTTCTGATGTTCTCTCGGGTGCGACCGCCAAGTTACCCGCAGACAAGGCGGCAACTAGGCAGGATGCCGAAGGAGTGGTGAGTGCCGAGTTGAGGAACAACCCGGACATGACCACACGTCCAGGTGGAGTTGCGGCTTCTGTTACTGCAGCTGCCAGGCTGAACGAAAATATGAATGTGAACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

261

Amino Acids

26.82

Weight (kDa)

4.82

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	16 - 71	1.1e-19	Seed maturation protein
SMP	PF04927	133 - 189	2.9e-22	Seed maturation protein
SMP	PF04927	198 - 256	1.8e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	340
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	189, 331
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
AflIII	ACRYGT	2 cut(s)	713, 780
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	714
AjiI	CACGTC	1 cut(s)	716
AjnI	CCWGG	5 cut(s)	286, 520, 528, 718, 752
AluBI	AGCT	7 cut(s)	176, 212, 248, 368, 437, 557, 749
AluI	AGCT	7 cut(s)	176, 212, 248, 368, 437, 557, 749
Alw26I	GTCTC	2 cut(s)	76, 269
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	613
AoxI	GGCC	8 cut(s)	23, 189, 214, 331, 420, 426, 446, 526
AsiGI	ACCGGT	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	4 cut(s)	79, 167, 427, 526
AsuC2I	CCSGG	2 cut(s)	76, 701
AsuHPI	GGTGA	2 cut(s)	502, 688
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	2 cut(s)	79, 167
AxyI	CCTNAGG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	100
BceAI	ACGGC	2 cut(s)	70, 555
BciT130I	CCWGG	5 cut(s)	288, 522, 530, 720, 754
BcnI	CCSGG	2 cut(s)	76, 701
BcoDI	GTCTC	2 cut(s)	76, 269
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	3 cut(s)	402, 483, 744
BfoI	RGCGCY	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	22
Bme1390I	CCNGG	7 cut(s)	76, 288, 522, 530, 701, 720, 754
Bme18I	GGWCC	2 cut(s)	79, 167
BmeRI	GACNNNNNGTC	1 cut(s)	714
BmeT110I	CYCGRG	1 cut(s)	613
BmgBI	CACGTC	1 cut(s)	716
BmgT120I	GGNCC	4 cut(s)	79, 167, 427, 526
BmiI	GGNNCC	4 cut(s)	80, 102, 345, 527
BmrFI	CCNGG	7 cut(s)	76, 288, 522, 530, 701, 720, 754
BmsI	GCATC	5 cut(s)	95, 100, 111, 454, 652
BoxI	GACNNNNGTC	1 cut(s)	281
BplI	GAGNNNNNCTC	4 cut(s)	10, 42, 201, 233
BpmI	CTGGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	76, 701
BsaAI	YACGTR	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	7 cut(s)	17, 75, 138, 286, 423, 521, 537
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	4 cut(s)	327, 334, 420, 449
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	5 cut(s)	288, 522, 530, 720, 754
BseDI	CCNNGG	7 cut(s)	17, 75, 138, 286, 423, 521, 537
BseGI	GGATG	2 cut(s)	86, 667
BseLI	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	4 cut(s)	327, 334, 420, 449
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	437
Bsh1285I	CGRYCG	2 cut(s)	192, 624
BshFI	GGCC	8 cut(s)	25, 191, 216, 333, 422, 428, 448, 528
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	352
BsiEI	CGRYCG	2 cut(s)	192, 624
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	4 cut(s)	75, 170, 353, 701
BslFI	GGGAC	3 cut(s)	92, 269, 583
BslI	CCNNNNNNNGG	4 cut(s)	32, 232, 340, 690
BsmAI	GTCTC	2 cut(s)	76, 269
BsmFI	GGGAC	3 cut(s)	92, 269, 583
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	8 cut(s)	25, 191, 216, 333, 422, 428, 448, 528
BsoBI	CYCGRG	1 cut(s)	613
Bsp143I	GATC	1 cut(s)	454
Bsp19I	CCATGG	1 cut(s)	138
BspANI	GGCC	8 cut(s)	25, 191, 216, 333, 422, 428, 448, 528
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	4 cut(s)	80, 102, 345, 527
BspMAI	CTGCAG	2 cut(s)	487, 748
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	4 cut(s)	327, 334, 420, 449
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	7 cut(s)	17, 75, 138, 286, 423, 521, 537
BssMI	GATC	1 cut(s)	454
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	5 cut(s)	288, 522, 530, 720, 754
Bst4CI	ACNGT	2 cut(s)	97, 268
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	783
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	138, 537
BstF5I	GGATG	2 cut(s)	86, 667
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	2 cut(s)	76, 269
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	2 cut(s)	192, 624
BstMWI	GCNNNNNNNGC	9 cut(s)	22, 222, 419, 434, 479, 539, 548, 563, 644
BstNI	CCWGG	5 cut(s)	288, 522, 530, 720, 754
BstPAI	GACNNNNGTC	1 cut(s)	281
BstSCI	CCNGG	7 cut(s)	74, 286, 520, 528, 699, 718, 752
BstSFI	CTRYAG	3 cut(s)	402, 483, 744
BstXI	CCANNNNNNTGG	3 cut(s)	97, 145, 437
BstZI	CGGCCG	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	8 cut(s)	25, 191, 216, 333, 422, 428, 448, 528
BtgI	CCRYGG	2 cut(s)	138, 537
BtgZI	GCGATG	2 cut(s)	131, 477
BtrI	CACGTC	1 cut(s)	716
BtsCI	GGATG	2 cut(s)	86, 667
BtsIMutI	CAGTG	4 cut(s)	264, 303, 413, 456
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	79, 167, 427, 526
CpoI	CGGWCCG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	52
CspAI	ACCGGT	1 cut(s)	352
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	5 cut(s)	139, 181, 254, 382, 706
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	27
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	714
EaeI	YGGCCR	2 cut(s)	189, 331
EagI	CGGCCG	1 cut(s)	189
Eam1105I	GACNNNNNGTC	1 cut(s)	714
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	2 cut(s)	25, 422
Eco47I	GGWCC	2 cut(s)	79, 167
Eco52I	CGGCCG	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	613
EcoO109I	RGGNCCY	2 cut(s)	79, 526
EcoRII	CCWGG	5 cut(s)	286, 520, 528, 718, 752
EcoT14I	CCWWGG	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	142, 184, 257, 385, 709
FaiI	YATR	9 cut(s)	140, 182, 255, 339, 383, 404, 561, 707, 770
FaqI	GGGAC	3 cut(s)	92, 269, 583
FatI	CATG	5 cut(s)	138, 180, 253, 381, 705
FauI	CCCGC	3 cut(s)	364, 559, 643
FokI	GGATG	2 cut(s)	73, 674
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	8 cut(s)	25, 191, 216, 333, 422, 428, 448, 528
HapII	CCGG	4 cut(s)	75, 170, 353, 701
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	142, 184, 257, 385, 709
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	4, 308
HpaII	CCGG	4 cut(s)	75, 170, 353, 701
HphI	GGTGA	2 cut(s)	502, 688
Hpy166II	GTNNAC	3 cut(s)	8, 320, 778
Hpy188I	TCNGA	2 cut(s)	459, 604
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	3 cut(s)	8, 320, 778
HpyAV	CCTTC	4 cut(s)	154, 251, 285, 662
HpyCH4III	ACNGT	2 cut(s)	97, 268
HpyCH4IV	ACGT	2 cut(s)	715, 782
HpyCH4V	TGCA	7 cut(s)	124, 184, 385, 395, 467, 485, 746
HpyF10VI	GCNNNNNNNGC	9 cut(s)	22, 222, 419, 434, 479, 539, 548, 563, 644
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	715, 782
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	142, 184, 257, 385, 709
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	343, 580
LweI	GCATC	5 cut(s)	95, 100, 111, 454, 652
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	715, 782
MaeIII	GTNAC	5 cut(s)	262, 268, 355, 630, 739
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	2 cut(s)	474, 516
MluNI	TGGCCA	1 cut(s)	333
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	13
Mox20I	TGGCCA	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	5 cut(s)	131, 176, 437, 470, 749
MspI	CCGG	4 cut(s)	75, 170, 353, 701
MspR9I	CCNGG	7 cut(s)	76, 288, 522, 530, 701, 720, 754
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	5 cut(s)	288, 522, 530, 720, 754
MwoI	GCNNNNNNNGC	9 cut(s)	22, 222, 419, 434, 479, 539, 548, 563, 644
NarI	GGCGCC	1 cut(s)	101
NciI	CCSGG	2 cut(s)	76, 701
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	5 cut(s)	142, 184, 257, 385, 709
NlaIV	GGNNCC	4 cut(s)	80, 102, 345, 527
NmeAIII	GCCGAG	3 cut(s)	42, 404, 709
NmuCI	GTSAC	1 cut(s)	262
PceI	AGGCCT	2 cut(s)	25, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	352
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	783
PpuMI	RGGWCCY	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	5 cut(s)	286, 520, 528, 718, 752
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	5 cut(s)	286, 520, 528, 718, 752
PspN4I	GGNNCC	4 cut(s)	80, 102, 345, 527
PspPI	GGNCC	4 cut(s)	79, 167, 427, 526
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	2 cut(s)	487, 748
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	3 cut(s)	176, 437, 749
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	258
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	4 cut(s)	79, 167, 427, 526
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	7 cut(s)	76, 288, 522, 530, 701, 720, 754
SfaNI	GCATC	5 cut(s)	95, 100, 111, 454, 652
SfcI	CTRYAG	3 cut(s)	402, 483, 744
SfoI	GGCGCC	1 cut(s)	102
SinI	GGWCC	2 cut(s)	79, 167
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	474, 516
SseBI	AGGCCT	2 cut(s)	25, 422
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	2 cut(s)	25, 422
StyD4I	CCNGG	7 cut(s)	74, 286, 520, 528, 699, 718, 752
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	97, 268
TaiI	ACGT	2 cut(s)	718, 785
TasI	AATT	2 cut(s)	474, 516
TauI	GCSGC	5 cut(s)	194, 473, 554, 650, 734
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	4 cut(s)	271, 310, 420, 456
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	270, 370, 785
TspRI	CASTG	4 cut(s)	271, 310, 420, 456
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	79, 167
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.