Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

54243197 .. 54244381

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G033080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTGAAATCTGTTGTGGAGCTCCGCATACCAGATATCATACACTCTCATGGTCATGCATTGACTTTGTCTGAAATAGCCTCATCCATCGATGTTGCATCACCCTCTCCAGATATCACATGCCTCTCTCGGATCATGCGGTTGCTGGTCCGCAGAAACATCTTCACCTCACATCATGGCGGTGGAGATTCTGGAGAAACCCTCTACGGGTTGACTCCTTCGTCTAGATGGCTCTTGTATGACTCGGAGCTCACTCTCGCTCCGATGGTTCTCTCGGAGACAAATCCTATTCTAATGGCTCCAATGCACTATTTCAGCCAATGCGTCAAGCAAGGTGGCCCATGTGCCTTTGAGAAAGCGCATGGGCGCGAAATTGTGCAATTCTTCTCCGAAAACCTTGAGATCAACCGATTGTTCAACGATGCCATGGCGTGTACCTCTAAGATTATAATGAAAGTGATACTTGCCAAATATAAGGGTGGGTTTGATGACGTGGCAAAACTGGTGGATGTTGGTGGTGGTACAGGAACCGCTGTGGCGGAGATTGTGAAGGCGTATCCCATCATTAACGGGATCAACTTTGATCTACCATATGTGGTTGCAACAGCACCGGCTTACCATGGGGTGTCACATGTCGGAGGTGACATGTTTGATCATTGGATTTTGCACGACTGGAGCGACAGCGATTGCATCAAGATATTGAACAACTGTCGGAAGGCAATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTGGAGCAAAATGGTGATGGCATGTTCGACGACACAGGCGTAGTTTTTGATCTGCTAATGATTGCTCATACCACGGGTGGAAAGGAGAGGAGCGAGAGTGAATGGAAGAAAATGTTGGAACAAGCAGGCTTCCCTCGCTACAAAATCATCAAAATTCCAGCTTTACCGTCCATTATCGAGGCCTACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

347

Amino Acids

38.17

Weight (kDa)

5.45

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 108	6.6e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	133 - 327	3.1e-50	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	307
AccII	CGCG	1 cut(s)	456
AciI	CCGC	6 cut(s)	112, 226, 238, 267, 618, 626
AclWI	GGATC	2 cut(s)	227, 668
AcsI	RAATTY	1 cut(s)	1002
AfaI	GTAC	3 cut(s)	62, 523, 610
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	2 cut(s)	718, 732
AgsI	TTSAA	3 cut(s)	94, 505, 790
AjiI	CACGTC	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	947, 979
AluBI	AGCT	3 cut(s)	109, 337, 1010
AluI	AGCT	3 cut(s)	109, 337, 1010
Alw21I	GWGCWC	2 cut(s)	111, 339
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	227, 668
AoxI	GGCC	3 cut(s)	40, 424, 1029
ApoI	RAATTY	1 cut(s)	1002
AspLEI	GCGC	2 cut(s)	448, 456
AspS9I	GGNCC	2 cut(s)	235, 425
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 841, 875
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	2 cut(s)	111, 339
BccI	CCATC	5 cut(s)	182, 309, 346, 656, 860
BciVI	GTATCC	1 cut(s)	654
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	235, 425
BmiI	GGNNCC	2 cut(s)	387, 616
BmsI	GCATC	3 cut(s)	194, 499, 786
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	4 cut(s)	180, 300, 781, 872
BpuEI	CTTGAG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	84, 513, 706, 921
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	4 cut(s)	331, 361, 931, 961
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	594, 764
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	4 cut(s)	84, 513, 706, 921
BseGI	GGATG	3 cut(s)	28, 170, 601
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	594, 764
BseRI	GAGGAG	1 cut(s)	952
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	42, 426, 1031
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	111, 339
BsiSI	CCGG	2 cut(s)	698, 812
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	3 cut(s)	42, 426, 1031
Bsp1286I	GDGCHC	2 cut(s)	111, 339
Bsp143I	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
Bsp19I	CCATGG	3 cut(s)	84, 513, 706
BspACI	CCGC	6 cut(s)	112, 226, 238, 267, 618, 626
BspANI	GGCC	3 cut(s)	42, 426, 1031
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	387, 616
BspPI	GGATC	2 cut(s)	227, 668
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	594, 764
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	4 cut(s)	84, 513, 706, 921
BssMI	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
BssT1I	CCWWGG	3 cut(s)	84, 513, 706
Bst4CI	ACNGT	2 cut(s)	797, 1017
BstC8I	GCNNGC	1 cut(s)	976
BstDEI	CTNAG	2 cut(s)	35, 528
BstDSI	CCRYGG	4 cut(s)	84, 513, 706, 921
BstF5I	GGATG	3 cut(s)	28, 170, 601
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	448, 456
BstKTI	GATC	6 cut(s)	222, 492, 663, 673, 742, 901
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	984
BstNSI	RCATGY	5 cut(s)	67, 210, 722, 736, 874
BstUI	CGCG	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	42, 426, 1031
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	4 cut(s)	84, 513, 706, 921
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	3 cut(s)	28, 170, 601
Cac8I	GCNNGC	1 cut(s)	976
CfoI	GCGC	2 cut(s)	448, 456
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	235, 425
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	61, 522, 609
CspCI	CAANNNNNGTGG	4 cut(s)	403, 438, 573, 608
CviQI	GTAC	3 cut(s)	61, 522, 609
DdeI	CTNAG	2 cut(s)	35, 528
DpnI	GATC	6 cut(s)	221, 491, 662, 672, 741, 900
DpnII	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 513, 706
Eco147I	AGGCCT	1 cut(s)	1031
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco32I	GATATC	2 cut(s)	124, 202
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	109, 337
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoRV	GATATC	2 cut(s)	124, 202
EcoT14I	CCWWGG	3 cut(s)	84, 513, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
ErhI	CCWWGG	3 cut(s)	84, 513, 706
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FauNDI	CATATG	1 cut(s)	679
FbaI	TGATCA	1 cut(s)	739
FokI	GGATG	3 cut(s)	35, 157, 608
FriOI	GRGCYC	2 cut(s)	111, 339
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	2 cut(s)	447, 455
GsuI	CTGGAG	4 cut(s)	180, 300, 781, 872
HaeIII	GGCC	3 cut(s)	42, 426, 1031
HapII	CCGG	2 cut(s)	698, 812
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	2 cut(s)	448, 456
Hin6I	GCGC	2 cut(s)	446, 454
HinP1I	GCGC	2 cut(s)	446, 454
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	80, 275, 301, 329
HpaII	CCGG	2 cut(s)	698, 812
HphI	GGTGA	5 cut(s)	180, 244, 740, 841, 875
Hpy166II	GTNNAC	3 cut(s)	300, 522, 841
Hpy188I	TCNGA	8 cut(s)	160, 219, 334, 351, 364, 478, 725, 801
Hpy188III	TCNNGA	5 cut(s)	197, 279, 312, 781, 851
Hpy8I	GTNNAC	3 cut(s)	300, 522, 841
Hpy99I	CGWCG	1 cut(s)	881
HpyAV	CCTTC	3 cut(s)	315, 631, 796
HpyCH4III	ACNGT	2 cut(s)	797, 1017
HpyCH4IV	ACGT	2 cut(s)	579, 843
HpyCH4V	TGCA	8 cut(s)	77, 146, 185, 394, 466, 689, 754, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	984
HpyF3I	CTNAG	2 cut(s)	35, 528
HpySE526I	ACGT	2 cut(s)	579, 843
HspAI	GCGC	2 cut(s)	446, 454
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
LmnI	GCTCC	8 cut(s)	106, 114, 334, 352, 391, 762, 853, 939
LweI	GCATC	3 cut(s)	194, 499, 786
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	579, 843
MaeIII	GTNAC	3 cut(s)	10, 714, 728
MalI	GATC	6 cut(s)	221, 491, 662, 672, 741, 900
MboI	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
MboII	GAAGA	3 cut(s)	241, 463, 967
MhlI	GDGCHC	2 cut(s)	111, 339
MluCI	AATT	4 cut(s)	17, 459, 467, 1002
MlyI	GAGTC	2 cut(s)	295, 323
MmeI	TCCRAC	3 cut(s)	703, 779, 945
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	3 cut(s)	135, 141, 267
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	698, 812
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	984
NcoI	CCATGG	3 cut(s)	84, 513, 706
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
NlaIV	GGNNCC	2 cut(s)	387, 616
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	5 cut(s)	67, 210, 722, 736, 874
PceI	AGGCCT	1 cut(s)	1031
PciI	ACATGT	2 cut(s)	718, 732
PcsI	WCGNNNNNNNCGW	2 cut(s)	762, 885
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	295, 323
PpsI	GAGTC	2 cut(s)	295, 323
PscI	ACATGT	2 cut(s)	718, 732
PsiI	TTATAA	1 cut(s)	536
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspN4I	GGNNCC	2 cut(s)	387, 616
PspPI	GGNCC	2 cut(s)	235, 425
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	3 cut(s)	62, 523, 610
RsaNI	GTAC	3 cut(s)	61, 522, 609
RseI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	1 cut(s)	654
Sau3AI	GATC	6 cut(s)	219, 489, 660, 670, 739, 898
Sau96I	GGNCC	2 cut(s)	235, 425
SchI	GAGTC	2 cut(s)	295, 323
SduI	GDGCHC	2 cut(s)	111, 339
SfaNI	GCATC	3 cut(s)	194, 499, 786
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	17, 459, 467, 1002
SseBI	AGGCCT	1 cut(s)	1031
SsiI	CCGC	6 cut(s)	112, 226, 238, 267, 618, 626
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1031
StyI	CCWWGG	3 cut(s)	84, 513, 706
TaaI	ACNGT	2 cut(s)	797, 1017
TaiI	ACGT	2 cut(s)	582, 846
TaqI	TCGA	3 cut(s)	177, 876, 1026
TasI	AATT	4 cut(s)	17, 459, 467, 1002
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TseFI	GTSAC	2 cut(s)	714, 728
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	2 cut(s)	39, 554
Tth111I	GACNNNGTC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	1002
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	5 cut(s)	67, 210, 722, 736, 874
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.