Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009627.1

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

75517 .. 76750

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009627.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggaaccagttacagaattggatgaagcaactctaagaggccaagcagacgtatggaagtacatgctcggctttgcagattccatggctttgaaatgtgctgtggagctccggataccagatattatacacactcatggtcatgcattgaccttgtctgaaataacctcgtccttcgactctgcatcaccctctccagacatcacatgcctctctcgcatcatgcggttgctggttcgcaggaacattttcaccgcacatcatgactgtggagattctggagaaaccctctacggcttgactcactcgtctagatggctcttacatgattcggagctcactctaactccgatggttctcatggagacaaatcctactctaatggcgccatggcactgtttcagccaatgcgtcaagcaaggtgctccatgcgcctttgagaaagcgcatggcagcgacatttggcaattcttcgccgaaaaacccgagttcaaccgattgttcaacgatggcatgtcgtgcaccgctaagattacaatgaaagcgatgctcacaggatataagggtgggtttgataacgtggcaacactggtggatgttggtggtgggactggaagcgcagtggcggagattgtgaagttgtatcccagcattaagggcattaactttgacctaccacatgtagtttcaatagcaccggagtaccatggggtgtcacatgttggaggtgacatgtttgataaaggcaatattccaaacactgatgcaattttcatgaagtggattatgcacgactggagcgacaacgattgcgtcaagatattgaaaaactgtcgaagggcgataccggagagaagtggcaaggtgattattgtggacgttgttctagagccaaatggtgatggcatgttcgacgacacaggcttggtgtttgatttgctaatggttgcacacgcctcaggtggaaaggagaggactgagagtgaatggaagaagatgttggaacttgcaggcttccctcgttacaaaatcatcaaaattccagctttatcgtccattattgaggcctaccctgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.7

Weight (kDa)

5.59

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	385
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	4 cut(s)	226, 255, 525, 626
AcsI	RAATTY	1 cut(s)	1038
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	2 cut(s)	62, 704
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgsI	TTSAA	5 cut(s)	94, 493, 505, 690, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	3 cut(s)	109, 337, 1046
AluI	AGCT	3 cut(s)	109, 337, 1046
Alw21I	GWGCWC	4 cut(s)	111, 339, 427, 524
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	2 cut(s)	40, 1065
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	1038
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	388, 434, 448, 620
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	524
BaeI	ACNNNNGTAYC	2 cut(s)	686, 719
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	4 cut(s)	111, 339, 427, 524
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	4 cut(s)	309, 346, 503, 896
BceAI	ACGGC	1 cut(s)	310
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	312, 887
BfoI	RGCGCY	1 cut(s)	389
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	6, 387
BmsI	GCATC	4 cut(s)	194, 228, 537, 754
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	3 cut(s)	180, 300, 817
BsaHI	GRCGYC	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	3 cut(s)	111, 697, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bse1I	ACTGG	4 cut(s)	8, 594, 616, 800
Bse21I	CCTNAGG	1 cut(s)	958
BseAI	TCCGGA	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	2 cut(s)	28, 601
BseMII	CTCAG	2 cut(s)	969, 972
BseNI	ACTGG	4 cut(s)	8, 594, 616, 800
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	465
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	2 cut(s)	42, 1067
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	4 cut(s)	111, 339, 427, 524
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	112, 698, 848
BslFI	GGGAC	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	42, 1067
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	4 cut(s)	111, 339, 427, 524
Bsp13I	TCCGGA	1 cut(s)	111
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	4 cut(s)	226, 255, 525, 626
BspANI	GGCC	2 cut(s)	42, 1067
BspCNI	CTCAG	2 cut(s)	970, 971
BspEI	TCCGGA	1 cut(s)	111
BspHI	TCATGA	2 cut(s)	262, 774
BspLI	GGNNCC	2 cut(s)	6, 387
BspT107I	GGYRCC	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	8, 594, 616, 800
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssNI	GRCGYC	1 cut(s)	386
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	3 cut(s)	269, 398, 833
BstACI	GRCGYC	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	4 cut(s)	35, 528, 958, 978
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstH2I	RGCGCY	1 cut(s)	389
BstHHI	GCGC	4 cut(s)	388, 434, 448, 620
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 431, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	465
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	2 cut(s)	42, 1067
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	28, 601
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	394, 587, 627, 759
Cac8I	GCNNGC	1 cut(s)	1012
CciI	TCATGA	2 cut(s)	262, 774
CfoI	GCGC	4 cut(s)	388, 434, 448, 620
CseI	GACGC	2 cut(s)	400, 802
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	4 cut(s)	35, 528, 958, 978
DinI	GGCGCC	1 cut(s)	387
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco53kI	GAGCTC	2 cut(s)	109, 337
Eco81I	CCTNAGG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
EgeI	GGCGCC	1 cut(s)	387
EheI	GGCGCC	1 cut(s)	387
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	35, 608
FriOI	GRGCYC	2 cut(s)	111, 339
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	2 cut(s)	312, 887
GlaI	GCGC	4 cut(s)	387, 433, 447, 619
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	3 cut(s)	180, 300, 817
HaeII	RGCGCY	1 cut(s)	389
HaeIII	GGCC	2 cut(s)	42, 1067
HapII	CCGG	3 cut(s)	112, 698, 848
HgaI	GACGC	2 cut(s)	400, 802
HhaI	GCGC	4 cut(s)	388, 434, 448, 620
Hin1I	GRCGYC	1 cut(s)	386
Hin6I	GCGC	4 cut(s)	386, 432, 446, 618
HinP1I	GCGC	4 cut(s)	386, 432, 446, 618
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	3 cut(s)	112, 698, 848
HphI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
Hpy166II	GTNNAC	2 cut(s)	522, 877
Hpy188I	TCNGA	3 cut(s)	160, 334, 351
Hpy188III	TCNNGA	8 cut(s)	112, 197, 263, 279, 312, 775, 817, 887
Hpy8I	GTNNAC	2 cut(s)	522, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	2 cut(s)	184, 831
HpyCH4III	ACNGT	3 cut(s)	269, 398, 833
HpyCH4IV	ACGT	3 cut(s)	51, 579, 879
HpyCH4V	TGCA	8 cut(s)	77, 146, 185, 522, 767, 790, 950, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 431, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 958, 978
HpySE526I	ACGT	3 cut(s)	51, 579, 879
Hsp92I	GRCGYC	1 cut(s)	386
HspAI	GCGC	4 cut(s)	386, 432, 446, 618
KasI	GGCGCC	1 cut(s)	385
Kpn2I	TCCGGA	1 cut(s)	111
LmnI	GCTCC	5 cut(s)	106, 114, 334, 430, 798
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	4 cut(s)	194, 228, 537, 754
MaeI	CTAG	2 cut(s)	312, 887
MaeII	ACGT	3 cut(s)	51, 579, 879
MaeIII	GTNAC	4 cut(s)	10, 714, 728, 1022
MboII	GAAGA	3 cut(s)	463, 1003, 1006
MhlI	GDGCHC	4 cut(s)	111, 339, 427, 524
MluCI	AATT	4 cut(s)	17, 467, 768, 1038
Mly113I	GGCGCC	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	173, 295
MmeI	TCCRAC	2 cut(s)	703, 981
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	654, 663
MslI	CAYNNNNRTG	3 cut(s)	135, 141, 267
MspI	CCGG	3 cut(s)	112, 698, 848
MwoI	GCNNNNNNNGC	4 cut(s)	216, 431, 519, 657
NarI	GGCGCC	1 cut(s)	386
NcoI	CCATGG	3 cut(s)	84, 389, 706
NlaIV	GGNNCC	2 cut(s)	6, 387
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
PagI	TCATGA	2 cut(s)	262, 774
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	3 cut(s)	679, 718, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	80, 275, 329
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	2 cut(s)	173, 295
PluTI	GGCGCC	1 cut(s)	389
PpsI	GAGTC	2 cut(s)	173, 295
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	6, 387
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	2 cut(s)	654, 663
SatI	GCNGC	1 cut(s)	454
SchI	GAGTC	2 cut(s)	173, 295
SduI	GDGCHC	4 cut(s)	111, 339, 427, 524
SfaNI	GCATC	4 cut(s)	194, 228, 537, 754
SfoI	GGCGCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	3 cut(s)	135, 141, 267
Sse9I	AATT	4 cut(s)	17, 467, 768, 1038
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	4 cut(s)	226, 255, 525, 626
SspDI	GGCGCC	1 cut(s)	385
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	312, 887
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	3 cut(s)	269, 398, 833
TaiI	ACGT	3 cut(s)	54, 582, 882
TaqI	TCGA	3 cut(s)	177, 835, 912
TasI	AATT	4 cut(s)	17, 467, 768, 1038
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	80, 275, 329
Tru1I	TTAA	2 cut(s)	654, 663
Tru9I	TTAA	2 cut(s)	654, 663
TscAI	CASTG	4 cut(s)	401, 594, 627, 766
TseFI	GTSAC	2 cut(s)	714, 728
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	4 cut(s)	39, 554, 763, 791
TspRI	CASTG	4 cut(s)	401, 594, 627, 766
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	2 cut(s)	311, 886
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	312, 887
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.