Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

12296823 .. 12298334

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG069400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAAATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTAAAATCTGTTGTGGAGCACCGGATACCAGATATCATACACTCTGATGGTCATGCAATGACTTTGTCTGAAATAGCCTGCTCCTTCGACTCTGCATCACCTTGTCTAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTAGTTCGCAGGAACATTTTCACGGCACAACCTGGCGGTGGAGATTCCGGAGATACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCCAATGGTTCTCATGGAGACAAATCCTACTCTAATGGAGCCATGGCACTATTTCAGCCAATGCGTCAAGCAAGGCGCCCTATGCGCCTTTGAGAAAGCGCATGGACGCGACATTTGGCAATTCTTTGCCAAAAAACCCGAGTTCAACCGATTATTCAACGATAGCATGCCATGCACCGCTAAGATTACAATGAAAGCGATACTCACTAGATATAAGGGTGGGTTTGATAACGTGGCAACACTTGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATCAACTTTGATCTACCACATGAAGTTGCAATAGCGCCGGTGTACCATGGGGTGTCACATAGAGGTGACATGTTTGATGACGGCAATATTCCAAACACTAATGCAATTTTCATGATGAGGATTATGCACGACTGGAGCGACATCGATTGCGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAGAGAAATGGCAAGGTGATTATTGTGGGCGTTGTTCTAGAGCCAAATGGTGATGGCATGTTTGACGACACAGGCTCGGTGTTTGATTTAGTAATGATTGCACACTCCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATGTTGGAACAAGCAGGCTTTCCTCGTTACAAAATCATCAAAATTCCGGCTTTATCGTCCATTATTGAGGCCTACCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

358

Amino Acids

39.77

Weight (kDa)

5.95

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	2.4e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 338	1.4e-55	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	4 cut(s)	226, 267, 525, 626
AcsI	RAATTY	1 cut(s)	1035
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	2 cut(s)	269, 294
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	3 cut(s)	493, 505, 823
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	2 cut(s)	40, 1062
ApoI	RAATTY	1 cut(s)	1035
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	425, 434, 448, 620, 697
AsuHPI	GGTGA	4 cut(s)	180, 737, 874, 908
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	955
BanI	GGYRCC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	131, 309, 893
BceAI	ACGGC	2 cut(s)	270, 757
BciT130I	CCWGG	1 cut(s)	264
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	6 cut(s)	197, 233, 312, 344, 555, 884
BfoI	RGCGCY	2 cut(s)	426, 698
BfuI	GTATCC	2 cut(s)	108, 654
Bme1390I	CCNGG	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	387, 424
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	38, 194, 228, 669
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	814
Bsa29I	ATCGAT	1 cut(s)	804
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	3 cut(s)	111, 278, 844
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 294
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	616, 797
Bse21I	CCTNAGG	1 cut(s)	955
Bse3DI	GCAATG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	2 cut(s)	28, 601
BseLI	CCNNNNNNNGG	2 cut(s)	269, 294
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	966, 969
BseNI	ACTGG	2 cut(s)	616, 797
BseRI	GAGGAG	1 cut(s)	943
BseYI	CCCAGC	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	42, 1064
BshNI	GGYRCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	5 cut(s)	112, 279, 698, 845, 1040
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	269, 294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	42, 1064
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	4 cut(s)	226, 267, 525, 626
BspANI	GGCC	2 cut(s)	42, 1064
BspCNI	CTCAG	2 cut(s)	967, 968
BspDI	ATCGAT	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	2 cut(s)	387, 424
BspT107I	GGYRCC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	616, 797
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssMI	GATC	1 cut(s)	670
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	830
BstACI	GRCGYC	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	3 cut(s)	169, 515, 1009
BstDEI	CTNAG	4 cut(s)	35, 528, 955, 975
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	2 cut(s)	426, 698
BstHHI	GCGC	5 cut(s)	425, 434, 448, 620, 697
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	5 cut(s)	67, 210, 517, 733, 907
BstSCI	CCNGG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	804
Bsu36I	CCTNAGG	1 cut(s)	955
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	2 cut(s)	42, 1064
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtsCI	GGATG	2 cut(s)	28, 601
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	3 cut(s)	169, 515, 1009
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	5 cut(s)	425, 434, 448, 620, 697
Cfr10I	RCCGGY	1 cut(s)	697
ClaI	ATCGAT	1 cut(s)	804
CseI	GACGC	3 cut(s)	400, 462, 799
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	4 cut(s)	35, 528, 955, 975
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	641
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1064
Eco32I	GATATC	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	955
Eco88I	CYCGRG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
FokI	GGATG	2 cut(s)	35, 608
FspBI	CTAG	6 cut(s)	197, 233, 312, 344, 555, 884
GlaI	GCGC	5 cut(s)	424, 433, 447, 619, 696
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	814
HaeII	RGCGCY	2 cut(s)	426, 698
HaeIII	GGCC	2 cut(s)	42, 1064
HapII	CCGG	5 cut(s)	112, 279, 698, 845, 1040
HgaI	GACGC	3 cut(s)	400, 462, 799
HhaI	GCGC	5 cut(s)	425, 434, 448, 620, 697
Hin1I	GRCGYC	1 cut(s)	423
Hin6I	GCGC	5 cut(s)	423, 432, 446, 618, 695
HinP1I	GCGC	5 cut(s)	423, 432, 446, 618, 695
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	5 cut(s)	112, 279, 698, 845, 1040
HphI	GGTGA	4 cut(s)	180, 737, 874, 908
Hpy166II	GTNNAC	3 cut(s)	300, 339, 703
Hpy188I	TCNGA	3 cut(s)	136, 160, 334
Hpy188III	TCNNGA	6 cut(s)	197, 279, 312, 772, 814, 884
Hpy8I	GTNNAC	3 cut(s)	300, 339, 703
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	830
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	8 cut(s)	77, 146, 185, 522, 689, 764, 787, 947
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 955, 975
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	423
HspAI	GCGC	5 cut(s)	423, 432, 446, 618, 695
KasI	GGCGCC	1 cut(s)	422
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	5 cut(s)	106, 176, 352, 385, 795
LweI	GCATC	4 cut(s)	38, 194, 228, 669
MaeI	CTAG	6 cut(s)	197, 233, 312, 344, 555, 884
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	4 cut(s)	10, 714, 725, 1019
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	2 cut(s)	1000, 1003
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	17, 467, 765, 1035
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	173, 295, 323
MmeI	TCCRAC	1 cut(s)	978
MnlI	CCTC	9 cut(s)	32, 221, 299, 716, 771, 963, 964, 1026, 1054
MroI	TCCGGA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	92, 654
MslI	CAYNNNNRTG	2 cut(s)	135, 723
MspI	CCGG	5 cut(s)	112, 279, 698, 845, 1040
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
NarI	GGCGCC	1 cut(s)	423
NcoI	CCATGG	3 cut(s)	84, 389, 706
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	2 cut(s)	387, 424
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	714, 725
NspI	RCATGY	5 cut(s)	67, 210, 517, 733, 907
PaeI	GCATGC	1 cut(s)	517
PagI	TCATGA	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PleI	GAGTC	3 cut(s)	173, 295, 323
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	3 cut(s)	173, 295, 323
PscI	ACATGT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	387, 424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	2 cut(s)	135, 723
SaqAI	TTAA	2 cut(s)	92, 654
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	3 cut(s)	173, 295, 323
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	7 cut(s)	193, 265, 349, 582, 727, 864, 961
SfaNI	GCATC	4 cut(s)	38, 194, 228, 669
SfoI	GGCGCC	1 cut(s)	424
SgrAI	CRCCGGYG	1 cut(s)	697
SmiMI	CAYNNNNRTG	2 cut(s)	135, 723
SphI	GCATGC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	17, 467, 765, 1035
SseBI	AGGCCT	1 cut(s)	1064
SsiI	CCGC	4 cut(s)	226, 267, 525, 626
SspDI	GGCGCC	1 cut(s)	422
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	6 cut(s)	197, 233, 312, 344, 555, 884
StuI	AGGCCT	1 cut(s)	1064
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	1 cut(s)	830
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	177, 804, 832
TasI	AATT	4 cut(s)	17, 467, 765, 1035
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	2 cut(s)	92, 654
Tru9I	TTAA	2 cut(s)	92, 654
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	2 cut(s)	714, 725
Tsp45I	GTSAC	2 cut(s)	714, 725
TspDTI	ATGAA	4 cut(s)	39, 554, 696, 760
TspRI	CASTG	1 cut(s)	627
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	1035
XbaI	TCTAGA	3 cut(s)	196, 311, 883
XceI	RCATGY	5 cut(s)	67, 210, 517, 733, 907
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	6 cut(s)	197, 233, 312, 344, 555, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.