Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

55607290 .. 55608758

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG296900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAGCAGTTACAGAAGTAGATGAAGCATCTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCCGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCTCATGGTCGTGCATTGACTTTGTCTGAAATAACTTGCTCCTTCGACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCAGGAACATCTTCACCTCACAGCCTGACGGTGGAGATTCCGGAGAAACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCCGATGGTTCTCATGGAGACAAATTCTACTCTAATGGAGCCATGGCACTGTTTCAGCCAATGTGTCAAGCAAGGCACCCCATGCGCCTTTGAGAAAGCACATGGCCGCGACATTTGGCAATTCTTCGCTGAAAAACCCGAGTTCAACCGATTGTTCAACGATGGCATGTCGTGCACCGCTAAGATTACAATGAAAGCGATGCTCACAGGATATAAGGGTGGGTTTGACAACGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTACGGGCATTAACTTTGACCTACCACATGTAGTTGCAATAGCGCCAGAGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGGAGGCAATATTCGAACACTGATGCAATTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

258

Amino Acids

28.38

Weight (kDa)

5.43

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	1.9e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 247	6.2e-30	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	2 cut(s)	111, 278
AciI	CCGC	5 cut(s)	70, 226, 454, 525, 626
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	2 cut(s)	269, 294
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgsI	TTSAA	2 cut(s)	493, 505
AluBI	AGCT	2 cut(s)	109, 347
AluI	AGCT	2 cut(s)	109, 347
Alw21I	GWGCWC	2 cut(s)	111, 524
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	2 cut(s)	111, 278
AoxI	GGCC	2 cut(s)	40, 451
ApaLI	GTGCAC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	434, 620, 697
AsuHPI	GGTGA	3 cut(s)	180, 244, 740
AsuII	TTCGAA	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 524
BccI	CCATC	4 cut(s)	309, 346, 503, 734
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	312, 344
BfoI	RGCGCY	1 cut(s)	698
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	387, 424
BmsI	GCATC	5 cut(s)	38, 194, 228, 537, 753
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	754
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	2 cut(s)	111, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 294
Bse1I	ACTGG	2 cut(s)	594, 616
BseAI	TCCGGA	2 cut(s)	111, 278
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	2 cut(s)	269, 294
BseNI	ACTGG	2 cut(s)	594, 616
BseSI	GKGCMC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	42, 453
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	2 cut(s)	111, 524
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	112, 279
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	269, 294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	42, 453
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	2 cut(s)	111, 524
Bsp13I	TCCGGA	2 cut(s)	111, 278
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	5 cut(s)	70, 226, 454, 525, 626
BspANI	GGCC	2 cut(s)	42, 453
BspEI	TCCGGA	2 cut(s)	111, 278
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	773
BspLI	GGNNCC	2 cut(s)	387, 424
BspT104I	TTCGAA	1 cut(s)	754
BspT107I	GGYRCC	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	594, 616
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	2 cut(s)	269, 398
BstAPI	GCANNNNNTGC	2 cut(s)	429, 519
BstBI	TTCGAA	1 cut(s)	754
BstDEI	CTNAG	2 cut(s)	35, 528
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	3 cut(s)	434, 620, 697
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 429, 519, 657
BstNSI	RCATGY	6 cut(s)	67, 210, 517, 683, 722, 736
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	456
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	2 cut(s)	42, 453
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	394, 587, 627, 758
CciI	TCATGA	1 cut(s)	773
CfoI	GCGC	3 cut(s)	434, 620, 697
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviJI	RGCY	9 cut(s)	42, 89, 109, 262, 319, 347, 388, 405, 453
CviKI_1	RGCY	9 cut(s)	42, 89, 109, 262, 319, 347, 388, 405, 453
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	2 cut(s)	35, 528
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	2 cut(s)	312, 344
GlaI	GCGC	3 cut(s)	433, 619, 696
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	42, 453
HapII	CCGG	2 cut(s)	112, 279
HhaI	GCGC	3 cut(s)	434, 620, 697
Hin6I	GCGC	3 cut(s)	432, 618, 695
HinP1I	GCGC	3 cut(s)	432, 618, 695
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	2 cut(s)	112, 279
HphI	GGTGA	3 cut(s)	180, 244, 740
Hpy166II	GTNNAC	3 cut(s)	300, 339, 522
Hpy188I	TCNGA	3 cut(s)	160, 334, 351
Hpy188III	TCNNGA	5 cut(s)	112, 197, 279, 312, 774
Hpy8I	GTNNAC	3 cut(s)	300, 339, 522
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	2 cut(s)	269, 398
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	77, 146, 185, 522, 689, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 429, 519, 657
HpyF3I	CTNAG	2 cut(s)	35, 528
HpySE526I	ACGT	1 cut(s)	579
HspAI	GCGC	3 cut(s)	432, 618, 695
Kpn2I	TCCGGA	2 cut(s)	111, 278
LmnI	GCTCC	6 cut(s)	72, 106, 114, 176, 352, 385
LweI	GCATC	5 cut(s)	38, 194, 228, 537, 753
MaeI	CTAG	2 cut(s)	312, 344
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	10, 714, 728
MboII	GAAGA	2 cut(s)	241, 463
MhlI	GDGCHC	2 cut(s)	111, 524
MluCI	AATT	3 cut(s)	370, 467, 767
MlyI	GAGTC	3 cut(s)	173, 295, 323
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	7 cut(s)	32, 202, 221, 265, 299, 719, 737
MroI	TCCGGA	2 cut(s)	111, 278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	92, 663
MslI	CAYNNNNRTG	2 cut(s)	135, 141
MspI	CCGG	2 cut(s)	112, 279
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	216, 429, 519, 657
NcoI	CCATGG	3 cut(s)	84, 389, 706
NlaIV	GGNNCC	2 cut(s)	387, 424
NmuCI	GTSAC	2 cut(s)	714, 728
NspI	RCATGY	6 cut(s)	67, 210, 517, 683, 722, 736
NspV	TTCGAA	1 cut(s)	754
PagI	TCATGA	1 cut(s)	773
PciI	ACATGT	3 cut(s)	679, 718, 732
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	3 cut(s)	173, 295, 323
PpsI	GAGTC	3 cut(s)	173, 295, 323
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	387, 424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	2 cut(s)	135, 141
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	92, 663
SatI	GCNGC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	173, 295, 323
SduI	GDGCHC	2 cut(s)	111, 524
SetI	ASST	6 cut(s)	111, 257, 349, 582, 675, 730
SfaNI	GCATC	5 cut(s)	38, 194, 228, 537, 753
SfuI	TTCGAA	1 cut(s)	754
SmiMI	CAYNNNNRTG	2 cut(s)	135, 141
Sse9I	AATT	3 cut(s)	370, 467, 767
SsiI	CCGC	5 cut(s)	70, 226, 454, 525, 626
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	312, 344
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	2 cut(s)	269, 398
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	177, 754
TasI	AATT	3 cut(s)	370, 467, 767
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	2 cut(s)	92, 663
Tru9I	TTAA	2 cut(s)	92, 663
TscAI	CASTG	4 cut(s)	401, 594, 627, 765
TseFI	GTSAC	2 cut(s)	714, 728
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	3 cut(s)	39, 554, 762
TspRI	CASTG	4 cut(s)	401, 594, 627, 765
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	6 cut(s)	67, 210, 517, 683, 722, 736
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	312, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.