Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

61554711 .. 61555877

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG424900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGCTACAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTGAAATCTGTTGTGGAGCTCCGCATACCAGATATCATACACTCTCATGGTCATGCATTGACTTTGTCCGAAATAGCCTCATCCATCGATTTTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGGATCATGCGGTTGCTGGTCCGCAGAAACATCTTCACCGCACATCATGGCAGTGGAGATTCCGAAGAAACCCTCTATGGGTTGACTCATTCGTCTAGATGGCTCTTGTATGACTCGGAGCTCACTCTCGCTCCAATGGTTCTCTCGGAGACAAATCCTATTCTAATGGCTCCAATGCACTATTTCAGCCAATGCGTCAAGCAAGGTGGCCCATGTGCCTTTGAGAAAGCGCATGGGCGTGAAATTGTGCAATTCTTCTCCGAAAACTTTGAGATCAACCGATTGTTCAATGATGCCATGACGTGTACCTCTAAGATTATAATGAAAGCGATACTCGCCGAATATAAGGTTGGGTTTGATGACATGGAAAAACTGGTGGATGTTGGTGGTGGGACAGGAACAACCATGGCCGAGATTGTGAAGGCGTATCCCAACATTAAGGAGATCAACTTTGATCTACCATATGTGGTTGCAACAGCGCCGGCGTACCATGGGGTGTCACATGTCGGAGGTGACATGTTTGATGAGGGCAATATTCCAAACGCTGATGCAATTTTTATGAAGTGGGTTTTGCACGACTGGAGCGACAGCGATTGCATCAAGATATTGAAGAACTGTCGGAAGGCAATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTGGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCGTAGTTTTTGATCTGCTAATGATTGCTCATACCACAGGTGGAAAGGAGAGGAGCGAGAGTGAATGGAAGAAAATGTTGGAACAATCAGGCTTCCCTCGCTACAAAATCATCAAAATTCCAGCTTTACTGTCCATTATCGAGGCCTACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.9

Weight (kDa)

5.18

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 108	6.3e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	133 - 339	8.7e-60	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	307
AciI	CCGC	4 cut(s)	112, 226, 238, 255
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	1038
AfaI	GTAC	3 cut(s)	62, 523, 704
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	3 cut(s)	518, 718, 732
AgsI	TTSAA	3 cut(s)	94, 505, 826
AjiI	CACGTC	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 983, 1015
AluBI	AGCT	4 cut(s)	11, 109, 337, 1046
AluI	AGCT	4 cut(s)	11, 109, 337, 1046
Alw21I	GWGCWC	2 cut(s)	111, 339
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	4 cut(s)	40, 424, 624, 1065
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	1038
AspLEI	GCGC	2 cut(s)	448, 697
AspS9I	GGNCC	2 cut(s)	235, 425
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
AvaII	GGWCC	1 cut(s)	235
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	2 cut(s)	111, 339
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	3 cut(s)	182, 309, 896
BciVI	GTATCC	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	235, 425
BmiI	GGNNCC	2 cut(s)	387, 891
BmsI	GCATC	4 cut(s)	194, 499, 754, 822
BpmI	CTGGAG	3 cut(s)	180, 817, 908
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	84, 621, 706
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	4 cut(s)	331, 361, 967, 997
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	594, 800
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	84, 621, 706
BseGI	GGATG	3 cut(s)	28, 170, 601
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	594, 800
BseRI	GAGGAG	1 cut(s)	988
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	4 cut(s)	42, 426, 626, 1067
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	111, 339
BsiSI	CCGG	2 cut(s)	698, 848
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	42, 426, 626, 1067
Bsp1286I	GDGCHC	2 cut(s)	111, 339
Bsp143I	GATC	5 cut(s)	219, 489, 660, 670, 934
Bsp19I	CCATGG	3 cut(s)	84, 621, 706
BspACI	CCGC	4 cut(s)	112, 226, 238, 255
BspANI	GGCC	4 cut(s)	42, 426, 626, 1067
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	387, 891
BspPI	GGATC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	594, 800
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	84, 621, 706
BssMI	GATC	5 cut(s)	219, 489, 660, 670, 934
BssT1I	CCWWGG	3 cut(s)	84, 621, 706
Bst4CI	ACNGT	2 cut(s)	833, 1053
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	2 cut(s)	35, 528
BstDSI	CCRYGG	3 cut(s)	84, 621, 706
BstF5I	GGATG	3 cut(s)	28, 170, 601
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	2 cut(s)	448, 697
BstKTI	GATC	5 cut(s)	222, 492, 663, 673, 937
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	219, 489, 660, 670, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 1020
BstNSI	RCATGY	5 cut(s)	67, 210, 722, 736, 910
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	20
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	4 cut(s)	42, 426, 626, 1067
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	3 cut(s)	84, 621, 706
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	28, 170, 601
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	699
CfoI	GCGC	2 cut(s)	448, 697
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	235, 425
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	61, 522, 703
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviQI	GTAC	3 cut(s)	61, 522, 703
DdeI	CTNAG	2 cut(s)	35, 528
DpnI	GATC	5 cut(s)	221, 491, 662, 672, 936
DpnII	GATC	5 cut(s)	219, 489, 660, 670, 934
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	624
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 621, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	109, 337
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 621, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
ErhI	CCWWGG	3 cut(s)	84, 621, 706
FaqI	GGGAC	1 cut(s)	622
FauNDI	CATATG	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	3 cut(s)	35, 157, 608
FriOI	GRGCYC	2 cut(s)	111, 339
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	2 cut(s)	447, 696
GluI	GCNGC	1 cut(s)	9
GsuI	CTGGAG	3 cut(s)	180, 817, 908
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	4 cut(s)	42, 426, 626, 1067
HapII	CCGG	2 cut(s)	698, 848
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	2 cut(s)	448, 697
Hin6I	GCGC	2 cut(s)	446, 695
HinP1I	GCGC	2 cut(s)	446, 695
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	80, 275, 301, 329
HpaII	CCGG	2 cut(s)	698, 848
HphI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
Hpy166II	GTNNAC	3 cut(s)	300, 522, 877
Hpy188I	TCNGA	8 cut(s)	160, 219, 280, 334, 364, 478, 725, 837
Hpy188III	TCNNGA	4 cut(s)	197, 312, 817, 887
Hpy8I	GTNNAC	3 cut(s)	300, 522, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	2 cut(s)	631, 832
HpyCH4III	ACNGT	2 cut(s)	833, 1053
HpyCH4IV	ACGT	2 cut(s)	518, 879
HpyCH4V	TGCA	9 cut(s)	77, 146, 185, 394, 466, 689, 767, 790, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 1020
HpyF3I	CTNAG	2 cut(s)	35, 528
HpySE526I	ACGT	2 cut(s)	518, 879
HspAI	GCGC	2 cut(s)	446, 695
KroI	GCCGGC	1 cut(s)	697
KroNI	GCCGGC	1 cut(s)	699
Kzo9I	GATC	5 cut(s)	219, 489, 660, 670, 934
LmnI	GCTCC	8 cut(s)	106, 114, 334, 352, 391, 798, 889, 975
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	4 cut(s)	194, 499, 754, 822
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	518, 879
MaeIII	GTNAC	2 cut(s)	714, 728
MalI	GATC	5 cut(s)	221, 491, 662, 672, 936
MboI	GATC	5 cut(s)	219, 489, 660, 670, 934
MboII	GAAGA	5 cut(s)	241, 293, 463, 838, 1003
MhlI	GDGCHC	2 cut(s)	111, 339
MluCI	AATT	5 cut(s)	17, 459, 467, 768, 1038
MlyI	GAGTC	2 cut(s)	295, 323
MmeI	TCCRAC	3 cut(s)	703, 815, 981
Mph1103I	ATGCAT	1 cut(s)	148
MreI	CGCCGGCG	1 cut(s)	697
MroNI	GCCGGC	1 cut(s)	697
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	4 cut(s)	135, 141, 267, 453
MspI	CCGG	2 cut(s)	698, 848
MwoI	GCNNNNNNNGC	2 cut(s)	551, 1020
NaeI	GCCGGC	1 cut(s)	699
NcoI	CCATGG	3 cut(s)	84, 621, 706
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	5 cut(s)	219, 489, 660, 670, 934
NgoMIV	GCCGGC	1 cut(s)	697
NlaIV	GGNNCC	2 cut(s)	387, 891
NmeAIII	GCCGAG	2 cut(s)	48, 652
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	5 cut(s)	67, 210, 722, 736, 910
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	2 cut(s)	718, 732
PcsI	WCGNNNNNNNCGW	2 cut(s)	798, 921
PdiI	GCCGGC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	295, 323
PpsI	GAGTC	2 cut(s)	295, 323
PscI	ACATGT	2 cut(s)	718, 732
PsiI	TTATAA	1 cut(s)	536
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspN4I	GGNNCC	2 cut(s)	387, 891
PspPI	GGNCC	2 cut(s)	235, 425
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	3 cut(s)	62, 523, 704
RsaNI	GTAC	3 cut(s)	61, 522, 703
RseI	CAYNNNNRTG	4 cut(s)	135, 141, 267, 453
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	5 cut(s)	219, 489, 660, 670, 934
Sau96I	GGNCC	2 cut(s)	235, 425
SchI	GAGTC	2 cut(s)	295, 323
SduI	GDGCHC	2 cut(s)	111, 339
SfaNI	GCATC	4 cut(s)	194, 499, 754, 822
SfcI	CTRYAG	1 cut(s)	12
SgrAI	CRCCGGYG	1 cut(s)	697
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	4 cut(s)	135, 141, 267, 453
Sse9I	AATT	5 cut(s)	17, 459, 467, 768, 1038
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	4 cut(s)	112, 226, 238, 255
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 621, 706
TaaI	ACNGT	2 cut(s)	833, 1053
TaiI	ACGT	2 cut(s)	521, 882
TaqI	TCGA	3 cut(s)	177, 912, 1062
TasI	AATT	5 cut(s)	17, 459, 467, 768, 1038
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	714, 728
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	3 cut(s)	39, 554, 791
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	5 cut(s)	67, 210, 722, 736, 910
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.