Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

23066009 .. 23067647

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G235300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAATGCTAGAAGTGAAGGAAGAGGAAGCCATACTACAAGGCCAAGTTGACATTTTGCGATACACGTACAATTTTGTTGAGAGCATGGCCTTGAAGTGTGCTGTGGAGCTTGGCATTGCAGACATCATAAACTCTCATGGCCAAGGCCAACCCATCACCTTATCTCAAATTGCACCACAAATTGCCTCGCCTTCAACCGACCTTGATCTCCTCTCACGTCTCTTGAGATTTTTGGTCCACATGAACCTCTTCGAGGCAACCATTGATCCAAAAACTGGTGACGCCCTCTACGGCCTCACGAGTTCATCCAAGTGGCTTTTGAGCAATGAGGAGCAAAGCCTGGCCCCTCTAGTGCTCATGGCCAATCAACCCCATCACTTAGCCTCCTGGCATTACCTAAGCCAATGCATAAAGGAAGGTGGATGTGGGTTCCAGAAAGCAAATGGGTTTAGCTTATATGATATCCCAAGTGAGAAATCTGAATTGGGAAATTACTTCAAAGAGGGTATGGCATGCACGTCTAGAATTGTCATGAAAGCAATCTTGTCGACTTATAAACAAGGGTTTGATGGCGTGGGATTGATTGTTGATGTTGGAGGAGGTCTAGGCACGGCTGTGGCTGAGATTGTGAAGGCTCATCCACATATAAGAGGTATCAATTTTGACCTAGCAGACGTGGTGGCTACGGCACCAAAGTACCCTGGTGTGATCCATGTGGGTGGTGACATGTTTGATGTTATTCCTAAGGCTGATGCCATTTTCATGAAGTGGATACTTCACAATTGGAATGATGAGAAATGCACTCAAATTCTGAAGAATTGTCGCAAAGCTATCCCTGAGAAAATTGGGAAGTTGGTTATAGTAGATGGGGTTCTTCTTCCAGATAATGGACTGTGGGACTCTTTTGTTCAAAGGTACGACCTGACGATGATGGTACAAACAATAAATGGGAAGGAGAGAAGTGAAGTTGAATGGAAGAAGCTTCTGAGGGAAGGAGGATTTGGTCGCTATAAGATCATCAAAATCCCAAGTTTTCTATCAATCATAGAAGCTTACCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

356

Amino Acids

39.35

Weight (kDa)

5.76

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	691
AccB7I	CCANNNNNTGG	2 cut(s)	278, 890
AccI	GTMKAC	1 cut(s)	551
AclWI	GGATC	2 cut(s)	263, 706
AcoI	YGGCCR	2 cut(s)	142, 363
AcsI	RAATTY	1 cut(s)	810
AcuI	CTGAAG	1 cut(s)	836
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	4 cut(s)	71, 701, 920, 939
AfiI	CCNNNNNNNGG	3 cut(s)	256, 278, 890
AflIII	ACRYGT	2 cut(s)	66, 729
AgsI	TTSAA	5 cut(s)	97, 198, 502, 914, 974
AjiI	CACGTC	3 cut(s)	221, 522, 679
AjnI	CCWGG	3 cut(s)	342, 389, 703
AjuI	GAANNNNNNNTTGG	4 cut(s)	470, 502, 987, 1019
AleI	CACNNNNGTG	1 cut(s)	617
AluBI	AGCT	5 cut(s)	112, 456, 833, 985, 1055
AluI	AGCT	5 cut(s)	112, 456, 833, 985, 1055
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	263, 706
AoxI	GGCC	7 cut(s)	43, 90, 142, 148, 295, 345, 363
ApoI	RAATTY	1 cut(s)	810
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	238, 346
AsuHPI	GGTGA	3 cut(s)	151, 293, 737
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	683, 716
BalI	TGGCCA	2 cut(s)	144, 365
BanI	GGYRCC	1 cut(s)	691
BarI	GAAGNNNNNNTAC	2 cut(s)	21, 53
BauI	CACGAG	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	360
BccI	CCATC	5 cut(s)	164, 384, 566, 863, 928
BceAI	ACGGC	3 cut(s)	310, 630, 705
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	3 cut(s)	344, 391, 705
BciVI	GTATCC	1 cut(s)	768
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	5 cut(s)	11, 353, 525, 608, 671
BfuI	GTATCC	1 cut(s)	768
Bme1390I	CCNGG	3 cut(s)	344, 391, 705
Bme18I	GGWCC	1 cut(s)	238
BmgBI	CACGTC	3 cut(s)	221, 522, 679
BmgT120I	GGNCC	2 cut(s)	238, 346
BmiI	GGNNCC	3 cut(s)	348, 434, 693
BmrFI	CCNGG	3 cut(s)	344, 391, 705
BmsI	GCATC	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	145, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 278, 890
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	3 cut(s)	12, 117, 334
BseBI	CCWGG	3 cut(s)	344, 391, 705
BseDI	CCNNGG	2 cut(s)	145, 703
BseGI	GGATG	3 cut(s)	308, 431, 640
BseLI	CCNNNNNNNGG	3 cut(s)	256, 278, 890
BseMI	GCAATG	3 cut(s)	12, 117, 334
BseMII	CTCAG	3 cut(s)	615, 831, 980
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	3 cut(s)	203, 347, 615
BshFI	GGCC	7 cut(s)	45, 92, 144, 150, 297, 347, 365
BshNI	GGYRCC	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	3 cut(s)	256, 278, 890
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	914
BsnI	GGCC	7 cut(s)	45, 92, 144, 150, 297, 347, 365
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	208, 268, 711, 1017
BspANI	GGCC	7 cut(s)	45, 92, 144, 150, 297, 347, 365
BspCNI	CTCAG	3 cut(s)	616, 832, 981
BspHI	TCATGA	2 cut(s)	534, 765
BspLI	GGNNCC	3 cut(s)	348, 434, 693
BspPI	GGATC	2 cut(s)	263, 706
BspT107I	GGYRCC	1 cut(s)	691
BsrDI	GCAATG	3 cut(s)	12, 117, 334
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	145, 703
BssMI	GATC	4 cut(s)	208, 268, 711, 1017
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	3 cut(s)	344, 391, 705
Bst4CI	ACNGT	1 cut(s)	897
Bst6I	CTCTTC	2 cut(s)	18, 257
BstACI	GRCGYC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	6 cut(s)	382, 401, 624, 747, 840, 989
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	308, 431, 640
BstKTI	GATC	4 cut(s)	211, 271, 714, 1020
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	208, 268, 711, 1017
BstNI	CCWGG	3 cut(s)	344, 391, 705
BstNSI	RCATGY	2 cut(s)	519, 733
BstSCI	CCNGG	3 cut(s)	342, 389, 703
BstXI	CCANNNNNNTGG	1 cut(s)	722
Bsu36I	CCTNAGG	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	768
BsuRI	GGCC	7 cut(s)	45, 92, 144, 150, 297, 347, 365
BtrI	CACGTC	3 cut(s)	221, 522, 679
BtsCI	GGATG	3 cut(s)	308, 431, 640
Cac8I	GCNNGC	1 cut(s)	517
CciI	TCATGA	2 cut(s)	534, 765
Cfr13I	GGNCC	2 cut(s)	238, 346
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	4 cut(s)	70, 700, 919, 938
CviAII	CATG	9 cut(s)	88, 140, 244, 361, 516, 535, 716, 730, 766
CviQI	GTAC	4 cut(s)	70, 700, 919, 938
DdeI	CTNAG	6 cut(s)	382, 401, 624, 747, 840, 989
DpnI	GATC	4 cut(s)	210, 270, 713, 1019
DpnII	GATC	4 cut(s)	208, 268, 711, 1017
EaeI	YGGCCR	2 cut(s)	142, 363
Eam1104I	CTCTTC	2 cut(s)	18, 257
EarI	CTCTTC	2 cut(s)	18, 257
Eco130I	CCWWGG	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	836
Eco81I	CCTNAGG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	3 cut(s)	342, 389, 703
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	9 cut(s)	91, 143, 247, 364, 519, 538, 719, 733, 769
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	9 cut(s)	87, 139, 243, 360, 515, 534, 715, 729, 765
FblI	GTMKAC	1 cut(s)	551
FokI	GGATG	3 cut(s)	295, 438, 627
FspBI	CTAG	5 cut(s)	11, 353, 525, 608, 671
HaeIII	GGCC	7 cut(s)	45, 92, 144, 150, 297, 347, 365
HgaI	GACGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	9 cut(s)	91, 143, 247, 364, 519, 538, 719, 733, 769
HincII	GTYRAC	2 cut(s)	52, 552
HindII	GTYRAC	2 cut(s)	52, 552
HindIII	AAGCTT	2 cut(s)	983, 1053
HinfI	GANTC	1 cut(s)	902
HphI	GGTGA	3 cut(s)	151, 293, 737
Hpy166II	GTNNAC	3 cut(s)	52, 241, 552
Hpy188I	TCNGA	3 cut(s)	484, 816, 990
Hpy188III	TCNNGA	7 cut(s)	226, 301, 436, 525, 535, 766, 884
Hpy8I	GTNNAC	3 cut(s)	52, 241, 552
HpyAV	CCTTC	6 cut(s)	13, 204, 413, 628, 949, 989
HpyCH4III	ACNGT	1 cut(s)	897
HpyCH4IV	ACGT	4 cut(s)	68, 220, 521, 678
HpyCH4V	TGCA	5 cut(s)	122, 176, 411, 519, 804
HpyF3I	CTNAG	6 cut(s)	382, 401, 624, 747, 840, 989
HpySE526I	ACGT	4 cut(s)	68, 220, 521, 678
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	9 cut(s)	91, 143, 247, 364, 519, 538, 719, 733, 769
Kzo9I	GATC	4 cut(s)	208, 268, 711, 1017
LmnI	GCTCC	2 cut(s)	109, 334
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	5 cut(s)	11, 353, 525, 608, 671
MaeII	ACGT	4 cut(s)	68, 220, 521, 678
MaeIII	GTNAC	2 cut(s)	281, 725
MalI	GATC	4 cut(s)	210, 270, 713, 1019
MboI	GATC	4 cut(s)	208, 268, 711, 1017
MboII	GAAGA	6 cut(s)	35, 244, 829, 869, 872, 991
MfeI	CAATTG	1 cut(s)	784
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	2 cut(s)	144, 365
MluNI	TGGCCA	2 cut(s)	144, 365
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	577
Mox20I	TGGCCA	2 cut(s)	144, 365
Mph1103I	ATGCAT	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	251
MscI	TGGCCA	2 cut(s)	144, 365
MslI	CAYNNNNRTG	4 cut(s)	313, 617, 720, 764
Msp20I	TGGCCA	2 cut(s)	144, 365
MspR9I	CCNGG	3 cut(s)	344, 391, 705
MunI	CAATTG	1 cut(s)	784
MvaI	CCWGG	3 cut(s)	344, 391, 705
NdeII	GATC	4 cut(s)	208, 268, 711, 1017
NlaIII	CATG	9 cut(s)	91, 143, 247, 364, 519, 538, 719, 733, 769
NlaIV	GGNNCC	3 cut(s)	348, 434, 693
NmuCI	GTSAC	2 cut(s)	281, 725
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	2 cut(s)	519, 733
OliI	CACNNNNGTG	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	519
PagI	TCATGA	2 cut(s)	534, 765
PciI	ACATGT	1 cut(s)	729
PdmI	GAANNNNTTC	1 cut(s)	251
PflMI	CCANNNNNTGG	2 cut(s)	278, 890
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
Ppu21I	YACGTR	1 cut(s)	69
PscI	ACATGT	1 cut(s)	729
PsiI	TTATAA	1 cut(s)	558
Psp6I	CCWGG	3 cut(s)	342, 389, 703
PspGI	CCWGG	3 cut(s)	342, 389, 703
PspN4I	GGNNCC	3 cut(s)	348, 434, 693
PspPI	GGNCC	2 cut(s)	238, 346
PsrI	GAACNNNNNNTAC	2 cut(s)	858, 890
RsaI	GTAC	4 cut(s)	71, 701, 920, 939
RsaNI	GTAC	4 cut(s)	70, 700, 919, 938
RseI	CAYNNNNRTG	4 cut(s)	313, 617, 720, 764
SalI	GTCGAC	1 cut(s)	550
Sau3AI	GATC	4 cut(s)	208, 268, 711, 1017
Sau96I	GGNCC	2 cut(s)	238, 346
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	3 cut(s)	344, 391, 705
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	1 cut(s)	745
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	4 cut(s)	313, 617, 720, 764
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SphI	GCATGC	1 cut(s)	519
SspMI	CTAG	5 cut(s)	11, 353, 525, 608, 671
StyD4I	CCNGG	3 cut(s)	342, 389, 703
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	897
TaiI	ACGT	4 cut(s)	71, 223, 524, 681
TaqI	TCGA	2 cut(s)	255, 551
TseFI	GTSAC	2 cut(s)	281, 725
Tsp45I	GTSAC	2 cut(s)	281, 725
TspDTI	ATGAA	5 cut(s)	260, 297, 551, 754, 782
Van91I	CCANNNNNTGG	2 cut(s)	278, 890
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	810
XbaI	TCTAGA	1 cut(s)	524
XceI	RCATGY	2 cut(s)	519, 733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	5 cut(s)	11, 353, 525, 608, 671
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.