Rmu_sc0003399.1_g000006
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003399.1
Physical Location & Seq
Forward (+)
28363 .. 29596
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003399.1_g000006.1.cds

Sequence Viewer

Length: 1080 bp
atggaagcagttacagaattggatgaagcaactctaagaggccaagcagacgtatggaagtacatgctcggctttgcagattccatggctttgaaatgcgctgtggagctccggataccagatattatacacactcatggtcatgcattgaccttgtctgaaataacctgctccttcgactctgcatcaccctctccagacatcacatgcctctctcgcatcatgcggttgctggttcgcaggaacatcttcaccgcacagcctgacggtggagattctggagaaaccctctacggattgactcactcgtctagatggcttttacatgactcggagttcactctagctccgatggttctgatggaaacaaattctactctagtggagccatggcactgtttcagccaatgtgtcaagcaaggccccccatgcgcctttgagaaagcgcatggcagcgacatttggcaattctccgccaaaaaacccgagttcaaccgattgttcaacgatggcatgtcgtgcaccactaagattacaatgaaagcgatgctcacaggatataagggtgggtttgataacgtggcaacactggtggatgttggtggtgggactggaagcgcagtggcggagattgtgaagttctatcccagcattaagggcattaactttgacctaccacatgtagtttcaatagcgccggagtaccatggggtgtcgcatgttggaggtgacatgtttgatgaaggcaatattccgaacactgatgcaattttcatgaagtggattatgcacgactggagcgacaacgattgcgtcaagatattgaaaaactgtcgaaaggcgataccggagagaagtggcaaggtgattattgtggacgttgttctagagccaaatggtgatggcatgttcgacgacacaggcttggtgtttgatttgctaatgattgcacacgcctcaggtggaaaggagaggactgagagtgaatggaagaagatgttcgaacttgcaggcttccctcgttacaaaatcatcaaaattccagctttatcgtccattattgaggcctaccctgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

359

Amino Acids

39.66

Weight (kDa)

5.37

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 4 cut(s) 226, 255, 474, 626
AcsI RAATTY 2 cut(s) 370, 1038
AfaI GTAC 2 cut(s) 62, 704
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 2 cut(s) 679, 732
AgsI TTSAA 5 cut(s) 94, 493, 505, 690, 826
AluBI AGCT 3 cut(s) 109, 347, 1046
AluI AGCT 3 cut(s) 109, 347, 1046
Alw21I GWGCWC 2 cut(s) 111, 524
Alw44I GTGCAC 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 3 cut(s) 40, 421, 1065
ApaLI GTGCAC 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 2 cut(s) 370, 1038
Asp700I GAANNNNTTC 2 cut(s) 248, 998
AspLEI GCGC 5 cut(s) 101, 434, 448, 620, 697
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 5 cut(s) 180, 244, 740, 877, 911
AsuII TTCGAA 1 cut(s) 1002
AvaI CYCGRG 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 958
BaeGI GKGCMC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 111, 524
BbvI GCAGC 1 cut(s) 465
BccI CCATC 5 cut(s) 309, 346, 355, 503, 896
BciVI GTATCC 1 cut(s) 108
BfaI CTAG 4 cut(s) 312, 344, 380, 887
BfoI RGCGCY 1 cut(s) 698
BfuAI ACCTGC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 387, 424
BmsI GCATC 4 cut(s) 194, 228, 537, 754
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpmI CTGGAG 3 cut(s) 180, 300, 817
Bpu14I TTCGAA 1 cut(s) 1002
BsaJI CCNNGG 3 cut(s) 84, 389, 706
BsaWI WCCGGW 2 cut(s) 111, 847
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 594, 616, 800
Bse21I CCTNAGG 1 cut(s) 958
BseAI TCCGGA 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 84, 389, 706
BseGI GGATG 2 cut(s) 28, 601
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 2 cut(s) 969, 972
BseNI ACTGG 3 cut(s) 594, 616, 800
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 647
BshFI GGCC 3 cut(s) 42, 423, 1067
BsiHKAI GWGCWC 2 cut(s) 111, 524
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 3 cut(s) 112, 698, 848
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 3 cut(s) 42, 423, 1067
BsoBI CYCGRG 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 1002
Bsp1286I GDGCHC 2 cut(s) 111, 524
Bsp13I TCCGGA 1 cut(s) 111
Bsp19I CCATGG 3 cut(s) 84, 389, 706
BspACI CCGC 4 cut(s) 226, 255, 474, 626
BspANI GGCC 3 cut(s) 42, 423, 1067
BspCNI CTCAG 2 cut(s) 970, 971
BspEI TCCGGA 1 cut(s) 111
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 2 cut(s) 387, 424
BspMI ACCTGC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 1002
BsrI ACTGG 3 cut(s) 594, 616, 800
BssECI CCNNGG 3 cut(s) 84, 389, 706
BssT1I CCWWGG 3 cut(s) 84, 389, 706
Bst4CI ACNGT 3 cut(s) 269, 398, 833
BstAPI GCANNNNNTGC 1 cut(s) 519
BstBI TTCGAA 1 cut(s) 1002
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 4 cut(s) 35, 528, 958, 978
BstDSI CCRYGG 3 cut(s) 84, 389, 706
BstF5I GGATG 2 cut(s) 28, 601
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 5 cut(s) 101, 434, 448, 620, 697
BstMWI GCNNNNNNNGC 4 cut(s) 216, 429, 519, 657
BstNSI RCATGY 7 cut(s) 67, 210, 517, 683, 722, 736, 910
BstSLI GKGCMC 1 cut(s) 524
BstV1I GCAGC 1 cut(s) 465
Bsu36I CCTNAGG 1 cut(s) 958
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 3 cut(s) 42, 423, 1067
BtgI CCRYGG 3 cut(s) 84, 389, 706
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 2 cut(s) 28, 601
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 4 cut(s) 394, 587, 627, 759
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 1012
CciI TCATGA 1 cut(s) 774
CfoI GCGC 5 cut(s) 101, 434, 448, 620, 697
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 1 cut(s) 802
Csp6I GTAC 2 cut(s) 61, 703
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviQI GTAC 2 cut(s) 61, 703
DdeI CTNAG 4 cut(s) 35, 528, 958, 978
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EciI GGCGGA 2 cut(s) 463, 641
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 84, 389, 706
Eco147I AGGCCT 1 cut(s) 1067
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 958
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 422
EcoT14I CCWWGG 3 cut(s) 84, 389, 706
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 3 cut(s) 84, 389, 706
FaqI GGGAC 1 cut(s) 622
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 2 cut(s) 35, 608
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 4 cut(s) 312, 344, 380, 887
GlaI GCGC 5 cut(s) 100, 433, 447, 619, 696
GluI GCNGC 1 cut(s) 454
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 3 cut(s) 180, 300, 817
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 3 cut(s) 42, 423, 1067
HapII CCGG 3 cut(s) 112, 698, 848
HgaI GACGC 1 cut(s) 802
HhaI GCGC 5 cut(s) 101, 434, 448, 620, 697
Hin6I GCGC 5 cut(s) 99, 432, 446, 618, 695
HinP1I GCGC 5 cut(s) 99, 432, 446, 618, 695
HinfI GANTC 5 cut(s) 80, 179, 275, 301, 329
HpaII CCGG 3 cut(s) 112, 698, 848
HphI GGTGA 5 cut(s) 180, 244, 740, 877, 911
Hpy166II GTNNAC 3 cut(s) 339, 522, 877
Hpy188I TCNGA 5 cut(s) 160, 334, 351, 360, 756
Hpy188III TCNNGA 7 cut(s) 112, 197, 279, 312, 775, 817, 887
Hpy8I GTNNAC 3 cut(s) 339, 522, 877
Hpy99I CGWCG 1 cut(s) 917
HpyAV CCTTC 2 cut(s) 184, 737
HpyCH4III ACNGT 3 cut(s) 269, 398, 833
HpyCH4IV ACGT 3 cut(s) 51, 579, 879
HpyCH4V TGCA 8 cut(s) 77, 146, 185, 522, 767, 790, 950, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 429, 519, 657
HpyF3I CTNAG 4 cut(s) 35, 528, 958, 978
HpySE526I ACGT 3 cut(s) 51, 579, 879
HspAI GCGC 5 cut(s) 99, 432, 446, 618, 695
Kpn2I TCCGGA 1 cut(s) 111
LmnI GCTCC 6 cut(s) 106, 114, 176, 352, 385, 798
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 4 cut(s) 194, 228, 537, 754
MaeI CTAG 4 cut(s) 312, 344, 380, 887
MaeII ACGT 3 cut(s) 51, 579, 879
MaeIII GTNAC 3 cut(s) 10, 728, 1022
MboII GAAGA 3 cut(s) 241, 1003, 1006
MhlI GDGCHC 2 cut(s) 111, 524
MluCI AATT 5 cut(s) 17, 370, 467, 768, 1038
MlyI GAGTC 3 cut(s) 173, 295, 323
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 9 cut(s) 32, 202, 221, 299, 719, 966, 967, 1029, 1057
Mph1103I ATGCAT 1 cut(s) 148
MroI TCCGGA 1 cut(s) 111
MroXI GAANNNNTTC 2 cut(s) 248, 998
MseI TTAA 2 cut(s) 654, 663
MslI CAYNNNNRTG 2 cut(s) 135, 141
MspI CCGG 3 cut(s) 112, 698, 848
MwoI GCNNNNNNNGC 4 cut(s) 216, 429, 519, 657
NcoI CCATGG 3 cut(s) 84, 389, 706
NlaIV GGNNCC 2 cut(s) 387, 424
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 728
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 7 cut(s) 67, 210, 517, 683, 722, 736, 910
NspV TTCGAA 1 cut(s) 1002
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 1067
PciI ACATGT 2 cut(s) 679, 732
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PdmI GAANNNNTTC 2 cut(s) 248, 998
PfeI GAWTC 2 cut(s) 80, 275
PflFI GACNNNGTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 455
PleI GAGTC 3 cut(s) 173, 295, 323
PpsI GAGTC 3 cut(s) 173, 295, 323
PscI ACATGT 2 cut(s) 679, 732
Psp124BI GAGCTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 647
PspN4I GGNNCC 2 cut(s) 387, 424
PspPI GGNCC 1 cut(s) 422
PsyI GACNNNGTC 1 cut(s) 154
RsaI GTAC 2 cut(s) 62, 704
RsaNI GTAC 2 cut(s) 61, 703
RseI CAYNNNNRTG 2 cut(s) 135, 141
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 654, 663
SatI GCNGC 1 cut(s) 454
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 3 cut(s) 173, 295, 323
SduI GDGCHC 2 cut(s) 111, 524
SfaNI GCATC 4 cut(s) 194, 228, 537, 754
SfuI TTCGAA 1 cut(s) 1002
SmiMI CAYNNNNRTG 2 cut(s) 135, 141
Sse9I AATT 5 cut(s) 17, 370, 467, 768, 1038
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 4 cut(s) 226, 255, 474, 626
SspI AATATT 1 cut(s) 751
SspMI CTAG 4 cut(s) 312, 344, 380, 887
SstI GAGCTC 1 cut(s) 111
StuI AGGCCT 1 cut(s) 1067
StyI CCWWGG 3 cut(s) 84, 389, 706
TaaI ACNGT 3 cut(s) 269, 398, 833
TaiI ACGT 3 cut(s) 54, 582, 882
TaqI TCGA 4 cut(s) 177, 835, 912, 1002
TasI AATT 5 cut(s) 17, 370, 467, 768, 1038
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 80, 275
Tru1I TTAA 2 cut(s) 654, 663
Tru9I TTAA 2 cut(s) 654, 663
TscAI CASTG 4 cut(s) 401, 594, 627, 766
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 5 cut(s) 39, 554, 756, 763, 791
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 4 cut(s) 401, 594, 627, 766
Tth111I GACNNNGTC 1 cut(s) 154
VneI GTGCAC 1 cut(s) 520
XapI RAATTY 2 cut(s) 370, 1038
XbaI TCTAGA 2 cut(s) 311, 886
XceI RCATGY 7 cut(s) 67, 210, 517, 683, 722, 736, 910
XmnI GAANNNNTTC 2 cut(s) 248, 998
XspI CTAG 4 cut(s) 312, 344, 380, 887
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.