Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

10832206 .. 10833270

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAAATGTATGGAAGTACATGCTTGGCTTTGTACATTCCATGGCTTTAAAATCTATTGTGGAGCACCGGATACCAGATATCATACACTCTGATGGTCATGCAATGACTTTGTCTGAAATAGCCTGCTCCGTCGACTCTGCATCACCTTGTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTAGTTCGCAGGAACATTTTCACGGCACAACCTGACGGTGGAGATTCCGGAGATACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCCAATGGTTCTCATGGAGACAAATCCTACTCTAATGGAGCCATGGCACTATTTCAGCCAATGCGTCAAGCAAGGCGCCCCATGCGCCTTTGAGAAAGCGCATGGCCGCGACATTTGGCAATTCTTTGCCAAAAAACCCGAGTTCAACCGATTATTCAACGATAGCATGCCATGCACCGCTAAGATTACAATGAAAGCGATACTCACTAGATATAAGGGTGGGTTTGATAACGTGGCAACACTTGTGGATGTTGGTGTTGTAACAGCGCCGGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGACGGCAATATTCCAAACACTGATGCAATTTTTCATGATGATAATTCAAAAGCCAAGATTATGCACGACTGGAGCGACATCGATTACATCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTTGACGACACAAGCTTGGTGTTTGATTTGGTAATGACTAATGATTGCACACTCCTCAGGTGGAAAGGAGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

306

Amino Acids

34.23

Weight (kDa)

5.32

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	3.4e-17	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 201	8.3e-09	O-methyltransferase domain
Methyltransf_2	PF00891	207 - 293	1.3e-14	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	3 cut(s)	226, 454, 525
AcoI	YGGCCR	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	3 cut(s)	62, 78, 623
AfiI	CCNNNNNNNGG	2 cut(s)	269, 294
AflIII	ACRYGT	2 cut(s)	637, 651
AgsI	TTSAA	4 cut(s)	493, 505, 708, 760
AluBI	AGCT	2 cut(s)	347, 858
AluI	AGCT	2 cut(s)	347, 858
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	2 cut(s)	40, 451
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	425, 434, 448, 616
AsuHPI	GGTGA	4 cut(s)	180, 659, 811, 845
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	131, 309, 830
BceAI	ACGGC	2 cut(s)	270, 679
BciVI	GTATCC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	5 cut(s)	233, 312, 344, 555, 821
BfoI	RGCGCY	2 cut(s)	426, 617
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	387, 424
BmsI	GCATC	4 cut(s)	38, 194, 228, 673
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	751
Bsa29I	ATCGAT	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	84, 389, 625
BsaWI	WCCGGW	3 cut(s)	111, 278, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 294
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	734
Bse21I	CCTNAGG	1 cut(s)	899
Bse3DI	GCAATG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	3 cut(s)	84, 389, 625
BseGI	GGATG	2 cut(s)	28, 601
BseLI	CCNNNNNNNGG	2 cut(s)	269, 294
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	887
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	42, 453
BshNI	GGYRCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	4 cut(s)	112, 279, 617, 782
BslI	CCNNNNNNNGG	2 cut(s)	269, 294
BsmAI	GTCTC	1 cut(s)	359
BsnI	GGCC	2 cut(s)	42, 453
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	278
Bsp1407I	TGTACA	1 cut(s)	76
Bsp19I	CCATGG	3 cut(s)	84, 389, 625
BspACI	CCGC	3 cut(s)	226, 454, 525
BspANI	GGCC	2 cut(s)	42, 453
BspCNI	CTCAG	1 cut(s)	912
BspDI	ATCGAT	1 cut(s)	741
BspEI	TCCGGA	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	387, 424
BspT107I	GGYRCC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	734
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	3 cut(s)	84, 389, 625
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	3 cut(s)	84, 389, 625
Bst4CI	ACNGT	2 cut(s)	269, 767
BstACI	GRCGYC	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	169, 515
BstDEI	CTNAG	3 cut(s)	35, 528, 899
BstDSI	CCRYGG	3 cut(s)	84, 389, 625
BstF5I	GGATG	2 cut(s)	28, 601
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	2 cut(s)	426, 617
BstHHI	GCGC	4 cut(s)	425, 434, 448, 616
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 429, 431, 519
BstNSI	RCATGY	6 cut(s)	67, 210, 517, 641, 655, 844
BstUI	CGCG	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	899
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	42, 453
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	3 cut(s)	84, 389, 625
BtsCI	GGATG	2 cut(s)	28, 601
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	2 cut(s)	169, 515
CciI	TCATGA	1 cut(s)	694
CfoI	GCGC	4 cut(s)	425, 434, 448, 616
Cfr10I	RCCGGY	1 cut(s)	616
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	61, 77, 622
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	3 cut(s)	61, 77, 622
DdeI	CTNAG	3 cut(s)	35, 528, 899
DinI	GGCGCC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	84, 389, 625
Eco32I	GATATC	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 625
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	3 cut(s)	84, 389, 625
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	35, 608
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	5 cut(s)	233, 312, 344, 555, 821
GlaI	GCGC	4 cut(s)	424, 433, 447, 615
GluI	GCNGC	1 cut(s)	454
GsuI	CTGGAG	1 cut(s)	751
HaeII	RGCGCY	2 cut(s)	426, 617
HaeIII	GGCC	2 cut(s)	42, 453
HapII	CCGG	4 cut(s)	112, 279, 617, 782
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	4 cut(s)	425, 434, 448, 616
Hin1I	GRCGYC	1 cut(s)	423
Hin6I	GCGC	4 cut(s)	423, 432, 446, 614
HinP1I	GCGC	4 cut(s)	423, 432, 446, 614
HincII	GTYRAC	2 cut(s)	178, 300
HindII	GTYRAC	2 cut(s)	178, 300
HindIII	AAGCTT	1 cut(s)	856
HinfI	GANTC	4 cut(s)	179, 275, 301, 329
HpaII	CCGG	4 cut(s)	112, 279, 617, 782
HphI	GGTGA	4 cut(s)	180, 659, 811, 845
Hpy166II	GTNNAC	5 cut(s)	178, 300, 339, 622, 811
Hpy188I	TCNGA	3 cut(s)	136, 160, 334
Hpy188III	TCNNGA	6 cut(s)	197, 279, 312, 695, 751, 821
Hpy8I	GTNNAC	5 cut(s)	178, 300, 339, 622, 811
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	269, 767
HpyCH4IV	ACGT	2 cut(s)	579, 813
HpyCH4V	TGCA	6 cut(s)	146, 185, 522, 686, 724, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 429, 431, 519
HpyF3I	CTNAG	3 cut(s)	35, 528, 899
HpySE526I	ACGT	2 cut(s)	579, 813
Hsp92I	GRCGYC	1 cut(s)	423
HspAI	GCGC	4 cut(s)	423, 432, 446, 614
KasI	GGCGCC	1 cut(s)	422
Kpn2I	TCCGGA	1 cut(s)	278
LmnI	GCTCC	5 cut(s)	106, 176, 352, 385, 732
LweI	GCATC	4 cut(s)	38, 194, 228, 673
MaeI	CTAG	5 cut(s)	233, 312, 344, 555, 821
MaeII	ACGT	2 cut(s)	579, 813
MaeIII	GTNAC	4 cut(s)	10, 607, 633, 647
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	17, 467, 687, 703
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	173, 295, 323
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	6 cut(s)	32, 221, 299, 638, 907, 908
MroI	TCCGGA	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	4 cut(s)	112, 279, 617, 782
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	216, 429, 431, 519
NarI	GGCGCC	1 cut(s)	423
NcoI	CCATGG	3 cut(s)	84, 389, 625
NlaIV	GGNNCC	2 cut(s)	387, 424
NmuCI	GTSAC	2 cut(s)	633, 647
NspI	RCATGY	6 cut(s)	67, 210, 517, 641, 655, 844
PaeI	GCATGC	1 cut(s)	517
PagI	TCATGA	1 cut(s)	694
PciI	ACATGT	2 cut(s)	637, 651
PcsI	WCGNNNNNNNCGW	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	3 cut(s)	173, 295, 323
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	3 cut(s)	173, 295, 323
PscI	ACATGT	2 cut(s)	637, 651
PspN4I	GGNNCC	2 cut(s)	387, 424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	3 cut(s)	62, 78, 623
RsaNI	GTAC	3 cut(s)	61, 77, 622
RseI	CAYNNNNRTG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	173, 295, 323
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	9 cut(s)	193, 265, 349, 582, 649, 801, 816, 860, 905
SfaNI	GCATC	4 cut(s)	38, 194, 228, 673
SfoI	GGCGCC	1 cut(s)	424
SgrAI	CRCCGGYG	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	135
SphI	GCATGC	1 cut(s)	517
Sse9I	AATT	4 cut(s)	17, 467, 687, 703
SsiI	CCGC	3 cut(s)	226, 454, 525
SspDI	GGCGCC	1 cut(s)	422
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	5 cut(s)	233, 312, 344, 555, 821
StyI	CCWWGG	3 cut(s)	84, 389, 625
TaaI	ACNGT	2 cut(s)	269, 767
TaiI	ACGT	2 cut(s)	582, 816
TaqI	TCGA	3 cut(s)	177, 741, 769
TasI	AATT	4 cut(s)	17, 467, 687, 703
TatI	WGTACW	2 cut(s)	60, 76
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	2 cut(s)	633, 647
Tsp45I	GTSAC	2 cut(s)	633, 647
TspDTI	ATGAA	3 cut(s)	39, 554, 683
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	685
Tth111I	GACNNNGTC	1 cut(s)	154
XbaI	TCTAGA	2 cut(s)	311, 820
XceI	RCATGY	6 cut(s)	67, 210, 517, 641, 655, 844
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	5 cut(s)	233, 312, 344, 555, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.