Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

52832888 .. 52834089

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCAGCTCTAAGAGGCCAAGCAGACGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTGAAATGCGCTGTGGAGCTCCGGATACCAGATATTATACACACTCATGGTCATGCATTGACCTTGTCTGAAATAACCTCGTCCTTCGACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCATGAACATTTTCACCGCACATCATGACTGTGGAGATTCTGGAGAAACCCTCTACGGCTTGACTCACTCGTCTAGATGGCTCTTACATGATTCGGAGCTCACTCTAACTCCGATGGTTCTCATGGAGACAAATCCTACTTTAATGGCGCCATGGCACTGTTTCAGCCAATGCGTCAAGCAAGGCGCCCCATGCGCCTTTGAGAAAGCGCATGGCCGCGACATTTGGCAATTCTTCGCCGAAAAACCCGAGTTCAACCGATTGTTCAACGATGGCATGTCGTGCACCGCTAAGATTACAATGAAAACGATGCTCACAGGATATAAGGGTGGGTTTGAAGATGTGGCAACACTGGTGGATGTTGGCGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAGGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGGTGTACCATGGAGTGTCACATGTTGGAGGTGACATGTTTGATGAGGGAAATATTCCAAACACTGATGCAATTTTCATGAAGGTAATTCAAAAGCCAAAGGATGAAAATGGTTCTTGTAGTTTACATTGCAATAGAACTCACTACATGGAACCATGGATTATGCACGACTGGAGCGACAGCGATTGCGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAAAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGCTAATGATTGCACACGCCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATGTTGGAACAAGCAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATTGTCCATTATTGAGGCCTTCCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

383

Amino Acids

42.45

Weight (kDa)

5.56

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	4e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 263	4.7e-34	O-methyltransferase domain
Methyltransf_2	PF00891	284 - 363	1.1e-20	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	385, 422
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	6 cut(s)	226, 255, 454, 525, 603, 626
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	1110
AcyI	GRCGYC	2 cut(s)	386, 423
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	1 cut(s)	654
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgsI	TTSAA	6 cut(s)	94, 493, 505, 575, 788, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AluBI	AGCT	4 cut(s)	32, 109, 337, 1118
AluI	AGCT	4 cut(s)	32, 109, 337, 1118
Alw21I	GWGCWC	3 cut(s)	111, 339, 524
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	3 cut(s)	40, 451, 1137
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	1110
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	7 cut(s)	101, 388, 425, 434, 448, 620, 697
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 949, 983
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	2 cut(s)	385, 422
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	3 cut(s)	111, 339, 524
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	4 cut(s)	309, 346, 503, 968
BceAI	ACGGC	1 cut(s)	310
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	312, 959
BfoI	RGCGCY	3 cut(s)	389, 426, 698
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	2 cut(s)	30, 454
BlsI	GCNGC	2 cut(s)	31, 455
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	3 cut(s)	387, 424, 849
BmsI	GCATC	5 cut(s)	194, 228, 537, 669, 754
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	3 cut(s)	180, 300, 889
BsaHI	GRCGYC	2 cut(s)	386, 423
BsaJI	CCNNGG	4 cut(s)	84, 389, 706, 851
BsaWI	WCCGGW	2 cut(s)	111, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	594, 616, 872
Bse21I	CCTNAGG	1 cut(s)	1030
Bse3DI	GCAATG	1 cut(s)	823
BseAI	TCCGGA	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	84, 389, 706, 851
BseGI	GGATG	3 cut(s)	28, 601, 805
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	2 cut(s)	1041, 1044
BseNI	ACTGG	3 cut(s)	594, 616, 872
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	42, 453, 1139
BshNI	GGYRCC	2 cut(s)	385, 422
BsiHKAI	GWGCWC	3 cut(s)	111, 339, 524
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	112, 698, 920
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	42, 453, 1139
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	3 cut(s)	111, 339, 524
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	4 cut(s)	84, 389, 706, 851
BspACI	CCGC	6 cut(s)	226, 255, 454, 525, 603, 626
BspANI	GGCC	3 cut(s)	42, 453, 1139
BspCNI	CTCAG	2 cut(s)	1042, 1043
BspEI	TCCGGA	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	2 cut(s)	262, 774
BspLI	GGNNCC	3 cut(s)	387, 424, 849
BspT107I	GGYRCC	2 cut(s)	385, 422
BsrDI	GCAATG	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	3 cut(s)	594, 616, 872
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	4 cut(s)	84, 389, 706, 851
BssMI	GATC	1 cut(s)	670
BssNI	GRCGYC	2 cut(s)	386, 423
BssT1I	CCWWGG	4 cut(s)	84, 389, 706, 851
Bst4CI	ACNGT	3 cut(s)	269, 398, 905
BstACI	GRCGYC	2 cut(s)	386, 423
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	1084
BstDEI	CTNAG	4 cut(s)	35, 528, 1030, 1050
BstDSI	CCRYGG	4 cut(s)	84, 389, 706, 851
BstF5I	GGATG	3 cut(s)	28, 601, 805
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	3 cut(s)	389, 426, 698
BstHHI	GCGC	7 cut(s)	101, 388, 425, 434, 448, 620, 697
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 982
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	1030
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	3 cut(s)	42, 453, 1139
BtgI	CCRYGG	4 cut(s)	84, 389, 706, 851
BtsCI	GGATG	3 cut(s)	28, 601, 805
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	394, 587, 627, 759
Cac8I	GCNNGC	1 cut(s)	1084
CciI	TCATGA	2 cut(s)	262, 774
CfoI	GCGC	7 cut(s)	101, 388, 425, 434, 448, 620, 697
Cfr10I	RCCGGY	1 cut(s)	697
CseI	GACGC	2 cut(s)	400, 874
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	4 cut(s)	35, 528, 1030, 1050
DinI	GGCGCC	2 cut(s)	387, 424
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	4 cut(s)	84, 389, 706, 851
Eco147I	AGGCCT	1 cut(s)	1139
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco53kI	GAGCTC	2 cut(s)	109, 337
Eco81I	CCTNAGG	1 cut(s)	1030
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoT14I	CCWWGG	4 cut(s)	84, 389, 706, 851
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
EgeI	GGCGCC	2 cut(s)	387, 424
EheI	GGCGCC	2 cut(s)	387, 424
ErhI	CCWWGG	4 cut(s)	84, 389, 706, 851
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	30, 454
FokI	GGATG	3 cut(s)	35, 608, 812
FriOI	GRGCYC	2 cut(s)	111, 339
Fsp4HI	GCNGC	2 cut(s)	30, 454
FspBI	CTAG	2 cut(s)	312, 959
GlaI	GCGC	7 cut(s)	100, 387, 424, 433, 447, 619, 696
GluI	GCNGC	2 cut(s)	30, 454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	3 cut(s)	180, 300, 889
HaeII	RGCGCY	3 cut(s)	389, 426, 698
HaeIII	GGCC	3 cut(s)	42, 453, 1139
HapII	CCGG	3 cut(s)	112, 698, 920
HgaI	GACGC	2 cut(s)	400, 874
HhaI	GCGC	7 cut(s)	101, 388, 425, 434, 448, 620, 697
Hin1I	GRCGYC	2 cut(s)	386, 423
Hin6I	GCGC	7 cut(s)	99, 386, 423, 432, 446, 618, 695
HinP1I	GCGC	7 cut(s)	99, 386, 423, 432, 446, 618, 695
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	3 cut(s)	112, 698, 920
HphI	GGTGA	5 cut(s)	180, 244, 740, 949, 983
Hpy166II	GTNNAC	4 cut(s)	522, 703, 821, 949
Hpy188I	TCNGA	3 cut(s)	160, 334, 351
Hpy188III	TCNNGA	8 cut(s)	112, 197, 263, 279, 312, 775, 889, 959
Hpy8I	GTNNAC	4 cut(s)	522, 703, 821, 949
Hpy99I	CGWCG	1 cut(s)	989
HpyAV	CCTTC	3 cut(s)	184, 772, 1150
HpyCH4III	ACNGT	3 cut(s)	269, 398, 905
HpyCH4IV	ACGT	2 cut(s)	51, 951
HpyCH4V	TGCA	9 cut(s)	77, 146, 185, 522, 689, 767, 828, 862, 1022
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 1030, 1050
HpySE526I	ACGT	2 cut(s)	51, 951
Hsp92I	GRCGYC	2 cut(s)	386, 423
HspAI	GCGC	7 cut(s)	99, 386, 423, 432, 446, 618, 695
KasI	GGCGCC	2 cut(s)	385, 422
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	4 cut(s)	106, 114, 334, 870
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	5 cut(s)	194, 228, 537, 669, 754
MaeI	CTAG	2 cut(s)	312, 959
MaeII	ACGT	2 cut(s)	51, 951
MaeIII	GTNAC	4 cut(s)	10, 714, 728, 1094
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	4 cut(s)	463, 587, 1075, 1078
MhlI	GDGCHC	3 cut(s)	111, 339, 524
MluCI	AATT	5 cut(s)	17, 467, 768, 783, 1110
Mly113I	GGCGCC	2 cut(s)	386, 423
MlyI	GAGTC	2 cut(s)	173, 295
MmeI	TCCRAC	2 cut(s)	703, 1053
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	3 cut(s)	135, 141, 267
MspI	CCGG	3 cut(s)	112, 698, 920
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
NarI	GGCGCC	2 cut(s)	386, 423
NcoI	CCATGG	4 cut(s)	84, 389, 706, 851
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	3 cut(s)	387, 424, 849
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 982
PagI	TCATGA	2 cut(s)	262, 774
PceI	AGGCCT	1 cut(s)	1139
PciI	ACATGT	3 cut(s)	679, 718, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	80, 275, 329
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	31, 455
PleI	GAGTC	2 cut(s)	173, 295
PluTI	GGCGCC	2 cut(s)	389, 426
PpsI	GAGTC	2 cut(s)	173, 295
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	387, 424, 849
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	2 cut(s)	30, 454
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	2 cut(s)	173, 295
SduI	GDGCHC	3 cut(s)	111, 339, 524
SfaNI	GCATC	5 cut(s)	194, 228, 537, 669, 754
SfoI	GGCGCC	2 cut(s)	387, 424
SgrAI	CRCCGGYG	1 cut(s)	697
SmiMI	CAYNNNNRTG	3 cut(s)	135, 141, 267
Sse9I	AATT	5 cut(s)	17, 467, 768, 783, 1110
SseBI	AGGCCT	1 cut(s)	1139
SsiI	CCGC	6 cut(s)	226, 255, 454, 525, 603, 626
SspDI	GGCGCC	2 cut(s)	385, 422
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	312, 959
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1139
StyI	CCWWGG	4 cut(s)	84, 389, 706, 851
TaaI	ACNGT	3 cut(s)	269, 398, 905
TaiI	ACGT	2 cut(s)	54, 954
TaqI	TCGA	3 cut(s)	177, 907, 984
TasI	AATT	5 cut(s)	17, 467, 768, 783, 1110
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	3 cut(s)	80, 275, 329
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	4 cut(s)	401, 594, 627, 766
TseFI	GTSAC	2 cut(s)	714, 728
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	6 cut(s)	39, 257, 554, 763, 791, 816
TspRI	CASTG	4 cut(s)	401, 594, 627, 766
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	1110
XbaI	TCTAGA	2 cut(s)	311, 958
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 982
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	312, 959
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.